myRT

myRT report for GCA_013417785.1_ASM1341778v1

Download annotations/find similar RTs

Seq: VPDH01000112.1 Acinetobacter sp. YH12227 NODE_110_length_6877_cov_39.605185, whole genome shotgun sequence (6877 bp)
Overview 1 RT 1: 3177-6756 bp Neighborhood of RT #1 [3177, 6785] HTH_XRE RVT-Retrons HsdM RMtype1_S_Ara36733I_TRD1-CR1_like Feature: gene Location: 3177-3332 bp Feature: gene Location: 3398-3691 bp Feature: domain Description: HTH_XRE Location: 3422-3575 bp Feature: domain Description: HTH_XRE Location: 3422-3575 bp Feature: gene Location: 3681-4583 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3891-4407 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3891 -4407 bp Feature: gene Location: 4720-6294 bp Feature: domain Description: HsdM Location: 4738-6265 bp Feature: domain Description: HsdM Location: 4738-6265 bp Feature: gene Location: 6294-6785 bp Feature: domain Description: RMtype1_S_Ara36733I_TRD1-CR1_like Location: 6339-6756 bp Feature: domain Description: RMtype1 _S_Ara36733I_TRD1 -CR1 _like Location: 6339-6756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, HsdM (COG0286), RMtype1_S_Ara36733I_TRD1-CR1_like (cd17268)

Seq: VPDH01000154.1 Acinetobacter sp. YH12227 NODE_152_length_2131_cov_152.110279, whole genome shotgun sequence (2131 bp)
Overview 1 RT 1: 3-1833 bp Neighborhood of RT #1 [3, 2129] RVT_N RVT-GII GIIM Feature: gene Location: 3-140 bp Feature: gene Location: 350-517 bp Feature: gene Location: 579-2129 bp Feature: RT Description: RVT_N Location: 624-867 bp Feature: RT Description: RVT_N Location: 62 4-867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 912-1548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 912 -1548 bp Feature: domain Description: GIIM Note: maturase Location: 1602-1833 bp Feature: domain Description: GIIM Note: maturase Location: 1602 -1833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)