myRT

myRT report for GCA_013418145.1_ASM1341814v1

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Seq: VPCP01000115.1 Acinetobacter sp. YH12201 NODE_114_length_6863_cov_64.861787, whole genome shotgun sequence (6863 bp)
Overview 1 RT 1: 2998-6685 bp Neighborhood of RT #1 [2998, 6685] DUF3800 RVT-Retrons DDE_Tnp_1_5 Feature: gene Location: 2998-3318 bp Feature: gene Location: 3562-4215 bp Feature: domain Description: DUF3800 Location: 3574-4141 bp Feature: domain Description: DUF3800 Location: 3574-41 41 bp Feature: gene Location: 4498-5205 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4549-5032 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4549-5032 bp Feature: gene Location: 5206-6138 bp Feature: domain Description: DDE_Tnp_1_5 Location: 5275-5596 bp Feature: domain Description: DDE_Tnp_1 _5 Location: 5275-5596 bp Feature: gene Location: 6194-6685 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3800 (pfam12686), RVT-Retrons, DDE_Tnp_1_5 (pfam13737)

Seq: VPCP01000127.1 Acinetobacter sp. YH12201 NODE_126_length_5552_cov_31.498802, whole genome shotgun sequence (5552 bp)
Overview 1 RT 1: 3481-5458 bp Neighborhood of RT #1 [3481, 5458] PHA02517 GIIM RVT-GII Feature: gene Location: 3481-3993 bp Feature: domain Description: PHA02517 Location: 3508-3973 bp Feature: domain Description: PHA02 517 Location: 3508-3973 bp Feature: gene Location: 4046-4390 bp Feature: domain Description: GIIM Note: maturase Location: 4082-4310 bp Feature: domain Description: GIIM Note: maturase Location: 4082 -4310 bp Feature: gene Location: 4565-5287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4763-5279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4763-52 79 bp Feature: gene Location: 5294-5458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), RVT-GII

Seq: VPCP01000144.1 Acinetobacter sp. YH12201 NODE_143_length_3398_cov_108.773769, whole genome shotgun sequence (3398 bp)
Overview 1 RT 1: 3-3341 bp Neighborhood of RT #1 [3, 3370] DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66_C TnpB_IS66 Feature: gene Location: 3-359 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6-339 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6-3 3 9 bp Feature: gene Location: 685-852 bp Feature: gene Location: 821-2575 bp Feature: RT Description: RVT_N Location: 959-1202 bp Feature: RT Description: RVT_N Location: 959-1202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1247-1883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1247-1883 bp Feature: domain Description: GIIM Note: maturase Location: 1937-2168 bp Feature: domain Description: GIIM Note: maturase Location: 193 7-2168 bp Feature: gene Location: 2689-2907 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2773-2884 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2773 -2884 bp Feature: gene Location: 3035-3370 bp Feature: domain Description: TnpB_IS66 Location: 3053-3341 bp Feature: domain Description: TnpB_IS66 Location: 3 053 -3 3 41 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VPCP01000057.1 Acinetobacter sp. YH12201 NODE_56_length_22528_cov_99.087541, whole genome shotgun sequence (22528 bp)
Overview 1 RT 1: 20386-22448 bp Neighborhood of RT #1 [20386, 22525] DUF4096 arnT RVT-GII GIIM Feature: gene Location: 20386-20538 bp Feature: domain Description: DUF4096 Location: 20404-20536 bp Feature: domain Description: DUF4 096 Location: 204 04 -20536 bp Feature: gene Location: 20634-21644 bp Feature: domain Description: arnT Location: 20637-21273 bp Feature: domain Description: arnT Location: 20637-21273 bp Feature: gene Location: 21734-22525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21740-22139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2174 0-22139 bp Feature: domain Description: GIIM Note: maturase Location: 22217-22448 bp Feature: domain Description: GIIM Note: maturase Location: 22217-224 4 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4096 (pfam13340), arnT (PRK13279), RVT-GII, GIIM (pfam08388)