myRT

myRT report for GCA_013418435.1_ASM1341843v1

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Seq: VPCB01000028.1 Acinetobacter sp. YH12142 NODE_26_length_16042_cov_21.372730, whole genome shotgun sequence (16042 bp)
Overview 1 RT 1: 238-4547 bp Neighborhood of RT #1 [238, 4645] DUF3287 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66_C HTH_XRE Feature: gene Location: 238-1680 bp Feature: domain Description: DUF3287 Location: 262-421 bp Feature: domain Description: DUF3287 Location: 262-421 bp Feature: domain Description: LZ_Tnp_IS66 Location: 451-676 bp Feature: domain Description: LZ_Tnp_IS66 Location: 451 -676 bp Feature: domain Description: zf-IS66 Location: 700-826 bp Feature: domain Description: zf-IS66 Location: 700-826 bp Feature: domain Description: DDE_Tnp_IS66 Location: 868-1660 bp Feature: domain Description: DDE_Tnp_IS66 Location: 868-1 660 bp Feature: gene Location: 2006-2173 bp Feature: gene Location: 2255-3895 bp Feature: RT Description: RVT_N Location: 2288-2522 bp Feature: RT Description: RVT_N Location: 2288-2522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2567-3203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2567-3203 bp Feature: domain Description: GIIM Note: maturase Location: 3257-3488 bp Feature: domain Description: GIIM Note: maturase Location: 3257-3488 bp Feature: gene Location: 4009-4227 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4093-4204 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4093-4204 bp Feature: gene Location: 4406-4645 bp Feature: domain Description: HTH_XRE Location: 4415-4547 bp Feature: domain Description: HTH_XRE Location: 441 5-4547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3287 (pfam11690), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), HTH_XRE (smart00530)

Seq: VPCB01000030.1 Acinetobacter sp. YH12142 NODE_28_length_12364_cov_42.682684, whole genome shotgun sequence (12364 bp)
Overview 1 RT 1: 10415-12262 bp Neighborhood of RT #1 [10415, 12262] HTH_XRE RVT-Retrons Feature: gene Location: 10415-10591 bp Feature: gene Location: 10678-10980 bp Feature: domain Description: HTH_XRE Location: 10693-10855 bp Feature: domain Description: HTH_XRE Location: 10693-10855 bp Feature: gene Location: 10989-11885 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11151-11679 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11151-11679 bp Feature: gene Location: 12110-12262 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons