myRT

myRT report for GCA_013419025.1_ASM1341902v1

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Seq: VPAX01000042.1 Acinetobacter sp. YH12109 NODE_41_length_7796_cov_26.828400, whole genome shotgun sequence (7796 bp)
Overview 1 RT 1: 1049-5303 bp Neighborhood of RT #1 [1049, 5317] HTH_XRE RVT-Retrons HsdM RMtype1_S_Sau1132ORF3780P-TRD2-CR2_like RMtype1_S_Sau1132ORF3780P-TRD2-CR2_like Feature: gene Location: 1049-1204 bp Feature: gene Location: 1213-1563 bp Feature: domain Description: HTH_XRE Location: 1294-1447 bp Feature: domain Description: HTH_XRE Location: 1 294-1 447 bp Feature: gene Location: 1553-2455 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1763-2279 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 763-2279 bp Feature: gene Location: 2592-4166 bp Feature: domain Description: HsdM Location: 2610-4137 bp Feature: domain Description: HsdM Location: 261 0-41 37 bp Feature: gene Location: 4166-5317 bp Feature: domain Description: RMtype1_S_Sau1132ORF3780P-TRD2-CR2_like Location: 4514-4757 bp Feature: domain Description: RMtype1 _S_Sau1 1 32ORF3780P-TRD2-CR2_like Location: 451 4-4757 bp Feature: domain Description: RMtype1_S_Sau1132ORF3780P-TRD2-CR2_like Location: 4826-5303 bp Feature: domain Description: RMtype1 _S_Sau1 1 32ORF3780P-TRD2-CR2_like Location: 4826-5303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, HsdM (COG0286), RMtype1_S_Sau1132ORF3780P-TRD2-CR2_like (cd17266)

Seq: VPAX01000049.1 Acinetobacter sp. YH12109 NODE_48_length_4786_cov_29.959219, whole genome shotgun sequence (4786 bp)
Overview 1 RT 1: 1937-4619 bp Neighborhood of RT #1 [1937, 4639] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1937-2068 bp Feature: gene Location: 2104-2616 bp Feature: domain Description: PHA02517 Location: 2131-2596 bp Feature: domain Description: PHA02 517 Location: 2 131-2 596 bp Feature: gene Location: 2669-3910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2867-3524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 867-352 4 bp Feature: domain Description: GIIM Note: maturase Location: 3602-3833 bp Feature: domain Description: GIIM Note: maturase Location: 3602 -3833 bp Feature: gene Location: 4403-4639 bp Feature: domain Description: PHA02517 Location: 4409-4619 bp Feature: domain Description: PHA02 517 Location: 4409-4619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)