myRT

myRT report for GCA_013420775.1_ASM1342077v1

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Seq: VOYF01000041.1 Acinetobacter sp. YH01010 NODE_40_length_7796_cov_24.469683, whole genome shotgun sequence (7796 bp)
Overview 1 RT 1: 2480-6748 bp Neighborhood of RT #1 [2480, 6748] RMtype1_S_Sau1132ORF3780P-TRD2-CR2_like RMtype1_S_Sau1132ORF3780P-TRD2-CR2_like HsdM RVT-Retrons HTH_XRE Feature: gene Location: 2480-3631 bp Feature: domain Description: RMtype1_S_Sau1132ORF3780P-TRD2-CR2_like Location: 2828-3071 bp Feature: domain Description: RMtype1 _S_Sau1 1 32ORF3780P-TRD2-CR2_like Location: 2828-3071 bp Feature: domain Description: RMtype1_S_Sau1132ORF3780P-TRD2-CR2_like Location: 3140-3617 bp Feature: domain Description: RMtype1 _S_Sau1 1 32ORF3780P-TRD2-CR2_like Location: 31 40-361 7 bp Feature: gene Location: 3631-5205 bp Feature: domain Description: HsdM Location: 3649-5176 bp Feature: domain Description: HsdM Location: 3649-51 76 bp Feature: gene Location: 5342-6244 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5552-6068 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5552-6068 bp Feature: gene Location: 6234-6584 bp Feature: domain Description: HTH_XRE Location: 6315-6468 bp Feature: domain Description: HTH_XRE Location: 631 5-6468 bp Feature: gene Location: 6593-6748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_Sau1132ORF3780P-TRD2-CR2_like (cd17266), HsdM (COG0286), RVT-Retrons, HTH_XRE (smart00530)

Seq: VOYF01000048.1 Acinetobacter sp. YH01010 NODE_47_length_4786_cov_33.474780, whole genome shotgun sequence (4786 bp)
Overview 1 RT 1: 1937-4619 bp Neighborhood of RT #1 [1937, 4639] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1937-2068 bp Feature: gene Location: 2104-2616 bp Feature: domain Description: PHA02517 Location: 2131-2596 bp Feature: domain Description: PHA02 517 Location: 2 131-2 596 bp Feature: gene Location: 2669-3910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2867-3524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 867-352 4 bp Feature: domain Description: GIIM Note: maturase Location: 3602-3833 bp Feature: domain Description: GIIM Note: maturase Location: 3602 -3833 bp Feature: gene Location: 4403-4639 bp Feature: domain Description: PHA02517 Location: 4409-4619 bp Feature: domain Description: PHA02 517 Location: 4409-4619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)