myRT

myRT report for GCA_013421115.1_ASM1342111v1

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Seq: JACCIO010000024.1 Pseudomonas aeruginosa strain NMI1897/13 NODE_24_length_96343_cov_46.373046, whole genome shotgun sequence (96343 bp)
Overview 1 RT 1: 37678-42798 bp Neighborhood of RT #1 [37678, 42809] PRK13360 COG3450 RVT_N RVT-GII YkfC HNHc rpmG RpmB Feature: gene Location: 37678-39006 bp Feature: domain Description: PRK13360 Location: 37684-38998 bp Feature: domain Description: PRK1 3360 Location: 37684-38998 bp Feature: gene Location: 39072-39434 bp Feature: domain Description: COG3450 Location: 39075-39420 bp Feature: domain Description: COG3450 Location: 39075-39420 bp Feature: gene Location: 39647-41344 bp Feature: domain Description: RVT_N Location: 39704-39947 bp Feature: domain Description: RVT_N Location: 39704-39947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39992-40628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39992-40628 bp Feature: domain Description: YkfC Location: 40850-40985 bp Feature: domain Description: YkfC Location: 40850-40985 bp Feature: domain Description: HNHc Note: nucleases Location: 41132-41297 bp Feature: domain Description: HNHc Note: nucleases Location: 41 1 32-41 297 bp Feature: gene Location: 42406-42561 bp Feature: domain Description: rpmG Location: 42409-42553 bp Feature: domain Description: rpmG Location: 42409-42553 bp Feature: gene Location: 42573-42809 bp Feature: domain Description: RpmB Location: 42576-42798 bp Feature: domain Description: RpmB Location: 42576-42798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13360 (omega amino acid--pyruvate transaminase; Provisional), COG3450 (Predicted enzyme of the cupin superfamily ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), rpmG (PRK00595), RpmB (COG0227)

Seq: JACCIO010000034.1 Pseudomonas aeruginosa strain NMI1897/13 NODE_34_length_36122_cov_44.130463, whole genome shotgun sequence (36122 bp)
Overview 1 RT 1: 1875-9186 bp Neighborhood of RT #1 [1875, 10241] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1875-3014 bp Feature: domain Description: AAA_21 Location: 1947-2016 bp Feature: domain Description: AAA_2 1 Location: 1947-2 016 bp Feature: domain Description: AAA_21 Location: 2490-2820 bp Feature: domain Description: AAA_2 1 Location: 2 490-2 82 0 bp Feature: gene Location: 3014-3571 bp Feature: gene Location: 3568-6588 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4063-4534 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4063-4534 bp Feature: gene Location: 6585-8366 bp Feature: domain Description: YeeA Location: 7452-8232 bp Feature: domain Description: YeeA Location: 7452 -82 32 bp Feature: gene Location: 8370-10241 bp Feature: domain Description: DUF262 Location: 8418-9186 bp Feature: domain Description: DUF2 62 Location: 8418-9186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: JACCIO010000005.1 Pseudomonas aeruginosa strain NMI1897/13 NODE_5_length_434454_cov_43.277047, whole genome shotgun sequence (434454 bp)
Overview 1 RT 1: 349124-359857 bp 2 RT 2: 376115-384935 bp Neighborhood of RT #1 [349124, 359859] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [376115, 384964] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 349124-349339 bp Feature: domain Description: NERD Location: 349151-349274 bp Feature: domain Description: NERD Location: 3 49151-3 49274 bp Feature: gene Location: 349552-350673 bp Feature: domain Description: COG3177 Location: 349570-350662 bp Feature: domain Description: COG3 177 Location: 3 49570-3 50662 bp Feature: gene Location: 351396-353081 bp Feature: domain Description: RVT_N Location: 351453-351693 bp Feature: domain Description: RVT_N Location: 3 51453 -3 51693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351741-352377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 51741-3 523 77 bp Feature: domain Description: GIIM Note: maturase Location: 352431-352662 bp Feature: domain Description: GIIM Note: maturase Location: 3 5243 1-3 52662 bp Feature: domain Description: HNH Note: nucleases Location: 352914-353052 bp Feature: domain Description: HNH Note: nucleases Location: 3 52914-3 53 052 bp Feature: gene Location: 354162-357899 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 354270-354927 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 3 54270-3 54927 bp Feature: domain Description: PRK09776 Location: 355140-355611 bp Feature: domain Description: PRK09776 Location: 3 55140-3 55611 bp Feature: domain Description: PAS Location: 355668-356193 bp Feature: domain Description: PAS Location: 3 55668-3 56193 bp Feature: domain Description: PRK10060 Location: 356205-357849 bp Feature: domain Description: PRK10060 Location: 3 56205-3 57849 bp Feature: gene Location: 358006-359859 bp Feature: domain Description: PRK05658 Location: 358018-359857 bp Feature: domain Description: PRK05658 Location: 3 58018-3 59857 bp Feature: gene Location: 376115-377329 bp Feature: domain Description: PRK10770 Location: 376127-377321 bp Feature: domain Description: PRK10770 Location: 3 76127-3 773 21 bp Feature: gene Location: 377388-380159 bp Feature: domain Description: LptD Location: 377583-380145 bp Feature: domain Description: LptD Location: 3 77583 -3 80145 bp Feature: gene Location: 380292-382004 bp Feature: domain Description: RVT_N Location: 380349-380592 bp Feature: domain Description: RVT_N Location: 3 803 49-3 80592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 380637-381273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 8063 7-3 81273 bp Feature: domain Description: YkfC Location: 381483-381633 bp Feature: domain Description: YkfC Location: 3 81483 -3 8163 3 bp Feature: domain Description: HNH Note: nucleases Location: 381810-381948 bp Feature: domain Description: HNH Note: nucleases Location: 3 81810-3 81948 bp Feature: gene Location: 383277-384293 bp Feature: domain Description: COG3178 Location: 383280-384279 bp Feature: domain Description: COG3 178 Location: 3 83 280-3 84279 bp Feature: gene Location: 384290-384964 bp Feature: domain Description: NTP_transferase_like_1 Location: 384296-384935 bp Feature: domain Description: NTP_transferase_like_1 Location: 3 84296-3 8493 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: JACCIO010000008.1 Pseudomonas aeruginosa strain NMI1897/13 NODE_8_length_266660_cov_41.796314, whole genome shotgun sequence (266660 bp)
Overview 1 RT 1: 254317-261241 bp Neighborhood of RT #1 [254317, 261324] CHD CHD RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 254317-255861 bp Feature: domain Description: CHD Location: 254533-254947 bp Feature: domain Description: CHD Location: 254 533-254 94 7 bp Feature: domain Description: CHD Location: 255175-255664 bp Feature: domain Description: CHD Location: 255175-255664 bp Feature: gene Location: 256945-257124 bp Feature: gene Location: 257856-259124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258069-258726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258069-258726 bp Feature: domain Description: GIIM Note: maturase Location: 258804-259026 bp Feature: domain Description: GIIM Note: maturase Location: 258804 -259026 bp Feature: gene Location: 259513-260154 bp Feature: domain Description: DUF772 Location: 259663-259858 bp Feature: domain Description: DUF772 Location: 259663-259858 bp Feature: gene Location: 260497-261324 bp Feature: domain Description: ABC_phnC Location: 260527-261241 bp Feature: domain Description: ABC_phnC Location: 260527-26124 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)