myRT

myRT report for GCA_013421145.1_ASM1342114v1

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Seq: JACCIK010000010.1 Pseudomonas aeruginosa strain NMI5352/14 NODE_10_length_269467_cov_33.396663, whole genome shotgun sequence (269467 bp)
Overview 1 RT 1: 135048-140613 bp Neighborhood of RT #1 [135048, 140627] RVT-GII GIIM PleD Feature: gene Location: 135048-135623 bp Feature: gene Location: 135634-136869 bp Feature: gene Location: 136948-138480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137416-138031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3741 6-1 38031 bp Feature: domain Description: GIIM Note: maturase Location: 138088-138307 bp Feature: domain Description: GIIM Note: maturase Location: 1 38088-1 38307 bp Feature: gene Location: 138209-138568 bp Feature: gene Location: 138843-140627 bp Feature: domain Description: PleD Location: 139755-140613 bp Feature: domain Description: PleD Location: 1 39755-1 4061 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PleD (COG3706)

Seq: JACCIK010000021.1 Pseudomonas aeruginosa strain NMI5352/14 NODE_21_length_79340_cov_33.762135, whole genome shotgun sequence (79340 bp)
Overview 1 RT 1: 582-3967 bp Neighborhood of RT #1 [582, 4050] RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 582-1850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 795-1452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 795-1452 bp Feature: domain Description: GIIM Note: maturase Location: 1530-1752 bp Feature: domain Description: GIIM Note: maturase Location: 1530-1752 bp Feature: gene Location: 2239-2880 bp Feature: domain Description: DUF772 Location: 2389-2584 bp Feature: domain Description: DUF772 Location: 2 389-2 584 bp Feature: gene Location: 3223-4050 bp Feature: domain Description: ABC_phnC Location: 3253-3967 bp Feature: domain Description: ABC_phnC Location: 32 53-3967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), ABC_phnC (TIGR02315), RVT-GII, GIIM (pfam08388)

Seq: JACCIK010000005.1 Pseudomonas aeruginosa strain NMI5352/14 NODE_5_length_440651_cov_34.367764, whole genome shotgun sequence (440651 bp)
Overview 1 RT 1: 341658-351964 bp 2 RT 2: 368222-377044 bp Neighborhood of RT #1 [341658, 351966] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [368222, 377073] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 341658-342779 bp Feature: domain Description: COG3177 Location: 341676-342768 bp Feature: domain Description: COG3 177 Location: 3 41676-3 42768 bp Feature: gene Location: 343038-343175 bp Feature: gene Location: 343503-345188 bp Feature: RT Description: RVT_N Location: 343560-343800 bp Feature: RT Description: RVT_N Location: 3 43 560-3 43 800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343848-344484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 43 848-3 44484 bp Feature: domain Description: GIIM Note: maturase Location: 344538-344769 bp Feature: domain Description: GIIM Note: maturase Location: 3 4453 8-3 44769 bp Feature: domain Description: HNH Note: nucleases Location: 345021-345159 bp Feature: domain Description: HNH Note: nucleases Location: 3 45021-3 45159 bp Feature: gene Location: 346269-350006 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 346377-347034 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 3 463 77-3 4703 4 bp Feature: domain Description: PRK09776 Location: 347247-347718 bp Feature: domain Description: PRK09776 Location: 3 47247-3 47718 bp Feature: domain Description: PAS Location: 347775-348300 bp Feature: domain Description: PAS Location: 3 47775-3 483 00 bp Feature: domain Description: PRK10060 Location: 348309-349956 bp Feature: domain Description: PRK10060 Location: 3 483 09-3 49956 bp Feature: gene Location: 350113-351966 bp Feature: domain Description: PRK05658 Location: 350125-351964 bp Feature: domain Description: PRK05658 Location: 3 50125-3 51964 bp Feature: gene Location: 368222-369436 bp Feature: domain Description: PRK10770 Location: 368234-369428 bp Feature: domain Description: PRK10770 Location: 3 6823 4-3 69428 bp Feature: gene Location: 369495-372269 bp Feature: domain Description: LptD Location: 369690-372255 bp Feature: domain Description: LptD Location: 3 69690-3 72255 bp Feature: gene Location: 372402-374114 bp Feature: RT Description: RVT_N Location: 372459-372702 bp Feature: RT Description: RVT_N Location: 3 72459-3 72702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 372747-373380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 72747-3 73 3 80 bp Feature: domain Description: YkfC Location: 373593-373743 bp Feature: domain Description: YkfC Location: 3 73 593 -3 73 743 bp Feature: domain Description: HNH Note: nucleases Location: 373920-374058 bp Feature: domain Description: HNH Note: nucleases Location: 3 73 920-3 74058 bp Feature: gene Location: 375386-376402 bp Feature: domain Description: COG3178 Location: 375389-376388 bp Feature: domain Description: COG3 178 Location: 3 753 89-3 763 88 bp Feature: gene Location: 376399-377073 bp Feature: domain Description: NTP_transferase_like_1 Location: 376405-377044 bp Feature: domain Description: NTP_transferase_like_1 Location: 3 76405-3 77044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)