myRT

myRT report for GCA_013421215.1_ASM1342121v1

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Seq: JACCIN010000010.1 Pseudomonas aeruginosa strain NMI3231/13 NODE_10_length_266660_cov_50.251233, whole genome shotgun sequence (266660 bp)
Overview 1 RT 1: 5337-9716 bp Neighborhood of RT #1 [5337, 9716] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 5337-6164 bp Feature: domain Description: ABC_phnC Location: 5367-6081 bp Feature: domain Description: ABC_phnC Location: 5367-6081 bp Feature: gene Location: 6507-7148 bp Feature: domain Description: DUF772 Location: 6657-6852 bp Feature: domain Description: DUF772 Location: 6657-6852 bp Feature: gene Location: 7537-8805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7750-8407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7750-8407 bp Feature: domain Description: GIIM Note: maturase Location: 8485-8707 bp Feature: domain Description: GIIM Note: maturase Location: 8485-8707 bp Feature: gene Location: 8955-9353 bp Feature: gene Location: 9537-9716 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: JACCIN010000022.1 Pseudomonas aeruginosa strain NMI3231/13 NODE_22_length_96287_cov_57.829825, whole genome shotgun sequence (96287 bp)
Overview 1 RT 1: 53535-58658 bp Neighborhood of RT #1 [53535, 58666] RpmB rpmG RVT_N RVT-GII YkfC HNHc COG3450 PRK13360 Feature: gene Location: 53535-53771 bp Feature: domain Description: RpmB Location: 53538-53760 bp Feature: domain Description: RpmB Location: 53538-53760 bp Feature: gene Location: 53783-53938 bp Feature: domain Description: rpmG Location: 53786-53930 bp Feature: domain Description: rpmG Location: 53786-53930 bp Feature: gene Location: 55000-56697 bp Feature: domain Description: RVT_N Location: 55057-55300 bp Feature: domain Description: RVT_N Location: 55057-55300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55345-55981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55345-55981 bp Feature: domain Description: YkfC Location: 56203-56338 bp Feature: domain Description: YkfC Location: 562 03-56338 bp Feature: domain Description: HNHc Note: nucleases Location: 56485-56650 bp Feature: domain Description: HNHc Note: nucleases Location: 56485-56650 bp Feature: gene Location: 56910-57272 bp Feature: domain Description: COG3450 Location: 56913-57258 bp Feature: domain Description: COG3450 Location: 56913-572 58 bp Feature: gene Location: 57338-58666 bp Feature: domain Description: PRK13360 Location: 57344-58658 bp Feature: domain Description: PRK13360 Location: 57344-58658 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpmB (COG0227), rpmG (PRK00595), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), COG3450 (Predicted enzyme of the cupin superfamily ), PRK13360 (omega amino acid--pyruvate transaminase; Provisional)

Seq: JACCIN010000031.1 Pseudomonas aeruginosa strain NMI3231/13 NODE_31_length_36122_cov_47.966551, whole genome shotgun sequence (36122 bp)
Overview 1 RT 1: 25882-34054 bp Neighborhood of RT #1 [25882, 34248] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25882-27753 bp Feature: domain Description: DUF262 Location: 25930-26698 bp Feature: domain Description: DUF262 Location: 2593 0-26698 bp Feature: gene Location: 27757-29538 bp Feature: domain Description: YeeA Location: 28624-29404 bp Feature: domain Description: YeeA Location: 28624-29404 bp Feature: gene Location: 29535-32555 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30030-30501 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 003 0-3 0501 bp Feature: gene Location: 32552-33109 bp Feature: gene Location: 33109-34248 bp Feature: domain Description: AAA_21 Location: 33181-33250 bp Feature: domain Description: AAA_21 Location: 3 3 181-3 3 250 bp Feature: domain Description: AAA_21 Location: 33724-34054 bp Feature: domain Description: AAA_21 Location: 3 3 724-3 4054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: JACCIN010000004.1 Pseudomonas aeruginosa strain NMI3231/13 NODE_4_length_471231_cov_53.680833, whole genome shotgun sequence (471231 bp)
Overview 1 RT 1: 385901-396634 bp 2 RT 2: 412892-421712 bp Neighborhood of RT #1 [385901, 396636] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [412892, 421741] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 385901-386116 bp Feature: domain Description: NERD Location: 385928-386051 bp Feature: domain Description: NERD Location: 385928-386051 bp Feature: gene Location: 386329-387450 bp Feature: domain Description: COG3177 Location: 386347-387439 bp Feature: domain Description: COG3177 Location: 38634 7-3874 39 bp Feature: gene Location: 388173-389858 bp Feature: domain Description: RVT_N Location: 388230-388470 bp Feature: domain Description: RVT_N Location: 388230-3884 70 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388518-389154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388518-389154 bp Feature: domain Description: GIIM Note: maturase Location: 389208-389439 bp Feature: domain Description: GIIM Note: maturase Location: 389208-3894 39 bp Feature: domain Description: HNH Note: nucleases Location: 389691-389829 bp Feature: domain Description: HNH Note: nucleases Location: 389691-389829 bp Feature: gene Location: 390939-394676 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 391047-391704 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 39104 7-391704 bp Feature: domain Description: PRK09776 Location: 391917-392388 bp Feature: domain Description: PRK09776 Location: 391917-392388 bp Feature: domain Description: PAS Location: 392445-392970 bp Feature: domain Description: PAS Location: 3924 4 5-392970 bp Feature: domain Description: PRK10060 Location: 392982-394626 bp Feature: domain Description: PRK10060 Location: 392982-394 626 bp Feature: gene Location: 394783-396636 bp Feature: domain Description: PRK05658 Location: 394795-396634 bp Feature: domain Description: PRK05658 Location: 394 795-396634 bp Feature: gene Location: 412892-414106 bp Feature: domain Description: PRK10770 Location: 412904-414098 bp Feature: domain Description: PRK10770 Location: 4 12904 -4 14 098 bp Feature: gene Location: 414165-416936 bp Feature: domain Description: LptD Location: 414360-416922 bp Feature: domain Description: LptD Location: 4 14 360-4 16922 bp Feature: gene Location: 417069-418781 bp Feature: domain Description: RVT_N Location: 417126-417369 bp Feature: domain Description: RVT_N Location: 4 17126-4 17369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 417414-418050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 174 14 -4 18050 bp Feature: domain Description: YkfC Location: 418260-418410 bp Feature: domain Description: YkfC Location: 4 18260-4 184 10 bp Feature: domain Description: HNH Note: nucleases Location: 418587-418725 bp Feature: domain Description: HNH Note: nucleases Location: 4 18587-4 18725 bp Feature: gene Location: 420054-421070 bp Feature: domain Description: COG3178 Location: 420057-421056 bp Feature: domain Description: COG3178 Location: 4 20057-4 21056 bp Feature: gene Location: 421067-421741 bp Feature: domain Description: NTP_transferase_like_1 Location: 421073-421712 bp Feature: domain Description: NTP_transferase_like_1 Location: 4 21073-4 21712 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)