myRT

myRT report for GCA_013421305.1_ASM1342130v1

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Seq: JACCIQ010000013.1 Pseudomonas aeruginosa strain NMI505/11 NODE_13_length_253448_cov_44.945062, whole genome shotgun sequence (253448 bp)
Overview 1 RT 1: 194761-199882 bp Neighborhood of RT #1 [194761, 199893] PRK13360 COG3450 RVT_N RVT-GII YkfC HNHc rpmG RpmB Feature: gene Location: 194761-196089 bp Feature: domain Description: PRK13360 Location: 194767-196081 bp Feature: domain Description: PRK1 3360 Location: 1 94767-1 96081 bp Feature: gene Location: 196155-196517 bp Feature: domain Description: COG3450 Location: 196158-196503 bp Feature: domain Description: COG3450 Location: 1 961 58-1 96503 bp Feature: gene Location: 196722-198428 bp Feature: RT Description: RVT_N Location: 196779-197019 bp Feature: RT Description: RVT_N Location: 1 96779-1 9701 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197067-197703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 97067-1 97703 bp Feature: domain Description: YkfC Location: 197925-198069 bp Feature: domain Description: YkfC Location: 1 97925-1 98069 bp Feature: domain Description: HNHc Note: nucleases Location: 198198-198372 bp Feature: domain Description: HNHc Note: nucleases Location: 1 981 98-1 98372 bp Feature: gene Location: 199490-199645 bp Feature: domain Description: rpmG Location: 199493-199637 bp Feature: domain Description: rpmG Location: 1 99493-1 99637 bp Feature: gene Location: 199657-199893 bp Feature: domain Description: RpmB Location: 199660-199882 bp Feature: domain Description: RpmB Location: 1 99660-1 99882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13360 (omega amino acid--pyruvate transaminase; Provisional), COG3450 (Predicted enzyme of the cupin superfamily ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), rpmG (PRK00595), RpmB (COG0227)

Seq: JACCIQ010000001.1 Pseudomonas aeruginosa strain NMI505/11 NODE_1_length_1194643_cov_39.811245, whole genome shotgun sequence (1194643 bp)
Overview 1 RT 1: 287477-291856 bp Neighborhood of RT #1 [287477, 291856] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 287477-288304 bp Feature: domain Description: ABC_phnC Location: 287507-288221 bp Feature: domain Description: ABC_phnC Location: 2 87507-2 882 2 1 bp Feature: gene Location: 288647-289288 bp Feature: domain Description: DUF772 Location: 288797-288992 bp Feature: domain Description: DUF772 Location: 2 88797-2 88992 bp Feature: gene Location: 289677-290945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 289890-290547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 89890-2 90547 bp Feature: domain Description: GIIM Note: maturase Location: 290625-290847 bp Feature: domain Description: GIIM Note: maturase Location: 2 9062 5-2 90847 bp Feature: gene Location: 291095-291493 bp Feature: gene Location: 291677-291856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: JACCIQ010000021.1 Pseudomonas aeruginosa strain NMI505/11 NODE_21_length_50272_cov_550.020062, whole genome shotgun sequence (50272 bp)
Overview 1 RT 1: 36123-38683 bp Neighborhood of RT #1 [36123, 38683] Avd_like RVT-DGRs Feature: gene Location: 36123-36479 bp Feature: domain Description: Avd_like Location: 36150-36453 bp Feature: domain Description: Avd_like Location: 3 6150-3 6453 bp Feature: gene Location: 36492-36704 bp Feature: gene Location: 36752-37861 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 36929-37613 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 6929-3 7613 bp Feature: gene Location: 37966-38271 bp Feature: gene Location: 38306-38683 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: JACCIQ010000008.1 Pseudomonas aeruginosa strain NMI505/11 NODE_8_length_416412_cov_43.459894, whole genome shotgun sequence (416412 bp)
Overview 1 RT 1: 329521-339827 bp 2 RT 2: 356086-364918 bp Neighborhood of RT #1 [329521, 339829] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [356086, 364947] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 329521-330642 bp Feature: domain Description: COG3177 Location: 329539-330631 bp Feature: domain Description: COG3177 Location: 329539-330631 bp Feature: gene Location: 330901-331038 bp Feature: gene Location: 331366-333051 bp Feature: RT Description: RVT_N Location: 331423-331663 bp Feature: RT Description: RVT_N Location: 3314 23-331663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331711-332347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331711-33234 7 bp Feature: domain Description: GIIM Note: maturase Location: 332401-332632 bp Feature: domain Description: GIIM Note: maturase Location: 3324 01-332632 bp Feature: domain Description: HNH Note: nucleases Location: 332884-333022 bp Feature: domain Description: HNH Note: nucleases Location: 332884 -333022 bp Feature: gene Location: 334132-337869 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 334240-334897 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 334 24 0-334 897 bp Feature: domain Description: PRK09776 Location: 335110-335581 bp Feature: domain Description: PRK09776 Location: 335110-335581 bp Feature: domain Description: PAS Location: 335638-336163 bp Feature: domain Description: PAS Location: 335638-336163 bp Feature: domain Description: PRK10060 Location: 336172-337819 bp Feature: domain Description: PRK10060 Location: 336172-337819 bp Feature: gene Location: 337976-339829 bp Feature: domain Description: PRK05658 Location: 337988-339827 bp Feature: domain Description: PRK05658 Location: 337988-339827 bp Feature: gene Location: 356086-357300 bp Feature: domain Description: PRK10770 Location: 356098-357292 bp Feature: domain Description: PRK10770 Location: 356098-357292 bp Feature: gene Location: 357359-360142 bp Feature: domain Description: LptD Location: 357554-360128 bp Feature: domain Description: LptD Location: 357554 -360128 bp Feature: gene Location: 360275-361987 bp Feature: RT Description: RVT_N Location: 360332-360575 bp Feature: RT Description: RVT_N Location: 360332-360575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 360620-361256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 360620-361256 bp Feature: domain Description: YkfC Location: 361463-361616 bp Feature: domain Description: YkfC Location: 3614 63-361616 bp Feature: domain Description: HNH Note: nucleases Location: 361793-361931 bp Feature: domain Description: HNH Note: nucleases Location: 361793-361931 bp Feature: gene Location: 363260-364276 bp Feature: domain Description: COG3178 Location: 363263-364262 bp Feature: domain Description: COG3178 Location: 363263-364 262 bp Feature: gene Location: 364273-364947 bp Feature: domain Description: NTP_transferase_like_1 Location: 364279-364918 bp Feature: domain Description: NTP_transferase_like_1 Location: 364 279-364 918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)