myRT

myRT report for GCA_013421845.1_ASM1342184v1

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Seq: PXGB01000017.1 Escherichia coli strain VC525m Contig17, whole genome shotgun sequence (111118 bp)
Overview 1 RT 1: 107915-111109 bp Neighborhood of RT #1 [107915, 111117] DUF932 RVT-GII Intron_maturas2 HNHc DUF932 Feature: gene Location: 107915-108160 bp Feature: gene Location: 108160-108546 bp Feature: domain Description: DUF932 Location: 108166-108511 bp Feature: domain Description: DUF932 Location: 1 081 66-1 0851 1 bp Feature: gene Location: 108719-110497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108980-109775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 08980-1 09775 bp Feature: domain Description: Intron_maturas2 Location: 109901-110126 bp Feature: domain Description: Intron_maturas2 Location: 1 09901 -1 1 01 26 bp Feature: domain Description: HNHc Note: nucleases Location: 110321-110471 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 0321 -1 1 0471 bp Feature: gene Location: 110989-111117 bp Feature: domain Description: DUF932 Location: 110998-111109 bp Feature: domain Description: DUF932 Location: 1 1 0998-1 1 1 1 09 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: PXGB01000042.1 Escherichia coli strain VC525m Contig42, whole genome shotgun sequence (19921 bp)
Overview 1 RT 1: 5325-9117 bp 2 RT 2: 12974-17240 bp Neighborhood of RT #1 [5325, 9117] RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Neighborhood of RT #2 [12974, 17245] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 5325-5594 bp Feature: gene Location: 6075-6215 bp Feature: gene Location: 6237-7961 bp Feature: RT Description: RVT_N Location: 6294-6531 bp Feature: RT Description: RVT_N Location: 62 94-6531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6582-7230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6582 -72 30 bp Feature: domain Description: YkfC Location: 7362-7518 bp Feature: domain Description: YkfC Location: 7362 -7518 bp Feature: domain Description: HNHc Note: nucleases Location: 7746-7905 bp Feature: domain Description: HNHc Note: nucleases Location: 7746-7905 bp Feature: gene Location: 8038-8940 bp Feature: domain Description: DUF1281 Location: 8107-8635 bp Feature: domain Description: DUF12 81 Location: 8107-8635 bp Feature: domain Description: DUF1281_C Location: 8641-8881 bp Feature: domain Description: DUF12 81_C Location: 8641-8881 bp Feature: gene Location: 8944-9117 bp Feature: gene Location: 12974-13855 bp Feature: gene Location: 14074-14283 bp Feature: gene Location: 14418-16319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14685-15516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14685-15516 bp Feature: domain Description: Intron_maturas2 Location: 15630-15888 bp Feature: domain Description: Intron_maturas2 Location: 15630-15888 bp Feature: domain Description: HNHc Note: nucleases Location: 16062-16224 bp Feature: domain Description: HNHc Note: nucleases Location: 16062 -162 2 4 bp Feature: gene Location: 16514-16954 bp Feature: domain Description: PRK13732 Location: 16520-16952 bp Feature: domain Description: PRK13732 Location: 1652 0-16952 bp Feature: gene Location: 17012-17245 bp Feature: domain Description: DUF905 Location: 17042-17240 bp Feature: domain Description: DUF905 Location: 17042 -172 40 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406), Intron_maturas2 (pfam01348), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)