myRT

myRT report for GCA_013422115.1_ASM1342211v1

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Seq: PXGP01000054.1 Escherichia coli strain Trh7 Contig54, whole genome shotgun sequence (18522 bp)
Overview 1 RT 1: 2351-6351 bp Neighborhood of RT #1 [2351, 6359] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 2351-3712 bp Feature: domain Description: DcuC Location: 2354-3686 bp Feature: domain Description: DcuC Location: 2354-3686 bp Feature: gene Location: 3765-4136 bp Feature: gene Location: 4358-4804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4664-4766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4664-4766 bp Feature: gene Location: 4852-5001 bp Feature: gene Location: 5328-6359 bp Feature: domain Description: Asparaginase_2 Location: 5418-6351 bp Feature: domain Description: Asparaginase_2 Location: 541 8-6351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)

Seq: PXGP01000061.1 Escherichia coli strain Trh7 Contig61, whole genome shotgun sequence (10857 bp)
Overview 1 RT 1: 1-4239 bp Neighborhood of RT #1 [1, 4239] PRK14702 INT_P4_C PHA02517 RVT-GII GIIM Feature: gene Location: 1-1053 bp Feature: domain Description: PRK14702 Location: 4-406 bp Feature: domain Description: PRK14702 Location: 4-406 bp Feature: domain Description: INT_P4_C Location: 409-985 bp Feature: domain Description: INT_P4_C Location: 409-985 bp Feature: gene Location: 1244-1567 bp Feature: domain Description: PHA02517 Location: 1247-1532 bp Feature: domain Description: PHA02 517 Location: 12 47-1532 bp Feature: gene Location: 1696-3219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1969-2701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1969-2 701 bp Feature: domain Description: GIIM Note: maturase Location: 2776-2974 bp Feature: domain Description: GIIM Note: maturase Location: 2 776-2 974 bp Feature: gene Location: 3513-3884 bp Feature: gene Location: 3955-4239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14702 (insertion element IS2 transposase InsD; Provisional), INT_P4_C (cd00801), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)