myRT

myRT report for GCA_013423565.1_ASM1342356v1

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Seq: JAAOQY010000045.1 Escherichia coli strain MVAST5574 plasmid pCol156 NODE_31_length_35898_cov_49, whole genome shotgun sequence (35898 bp)
Overview 1 RT 1: 7443-10878 bp 2 RT 2: 21603-24278 bp Neighborhood of RT #1 [7443, 10943] InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [21603, 24286] InsE PHA02517 RVT-GII PRK10173 PRK10173 Feature: gene Location: 7443-7847 bp Feature: domain Description: InsE Location: 7473-7809 bp Feature: domain Description: InsE Location: 7473-7809 bp Feature: gene Location: 7876-8232 bp Feature: domain Description: PHA02517 Location: 7879-8188 bp Feature: domain Description: PHA0251 7 Location: 7879-81 88 bp Feature: gene Location: 8349-9872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8622-9354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8622-9354 bp Feature: domain Description: GIIM Note: maturase Location: 9429-9627 bp Feature: domain Description: GIIM Note: maturase Location: 9429-9627 bp Feature: gene Location: 9826-10251 bp Feature: gene Location: 10464-10943 bp Feature: domain Description: PHA02517 Location: 10524-10878 bp Feature: domain Description: PHA0251 7 Location: 1 0524-1 0878 bp Feature: gene Location: 21603-21929 bp Feature: domain Description: InsE Location: 21606-21927 bp Feature: domain Description: InsE Location: 21 606-21 927 bp Feature: gene Location: 21929-22408 bp Feature: domain Description: PHA02517 Location: 21989-22343 bp Feature: domain Description: PHA0251 7 Location: 21 989-22343 bp Feature: gene Location: 23000-23503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23273-23342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23273-23342 bp Feature: gene Location: 23542-23853 bp Feature: domain Description: PRK10173 Location: 23545-23764 bp Feature: domain Description: PRK1 01 73 Location: 23545-23764 bp Feature: gene Location: 23837-24286 bp Feature: domain Description: PRK10173 Location: 23840-24278 bp Feature: domain Description: PRK1 01 73 Location: 23840-24278 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)

Seq: JAAOQY010000012.1 Escherichia coli strain MVAST5574 NODE_1_length_527878_cov_20, whole genome shotgun sequence (527878 bp)
Overview 1 RT 1: 348844-352826 bp Neighborhood of RT #1 [348844, 352852] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 348844-349875 bp Feature: domain Description: Asparaginase_2 Location: 348934-349867 bp Feature: domain Description: Asparaginase_2 Location: 348934-349867 bp Feature: gene Location: 350202-350351 bp Feature: gene Location: 350399-350845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350705-350807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350705-350807 bp Feature: gene Location: 351067-351438 bp Feature: gene Location: 351491-352852 bp Feature: domain Description: DcuC Location: 351494-352826 bp Feature: domain Description: DcuC Location: 351494-352 82 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)

Seq: JAAOQY010000028.1 Escherichia coli strain MVAST5574 NODE_7_length_243191_cov_21, whole genome shotgun sequence (243191 bp)
Overview 1 RT 1: 173852-179883 bp Neighborhood of RT #1 [173852, 179883] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 173852-174772 bp Feature: domain Description: AbiEii Location: 173894-174635 bp Feature: domain Description: AbiEii Location: 173 894-17463 5 bp Feature: gene Location: 174759-175562 bp Feature: domain Description: AbiEi_3_N Location: 174792-175053 bp Feature: domain Description: AbiEi_3 _N Location: 174792-175053 bp Feature: domain Description: AbiEi_3 Location: 175065-175521 bp Feature: domain Description: AbiEi_3 Location: 175065-175521 bp Feature: gene Location: 175857-179066 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 176385-176874 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1763 85-176874 bp Feature: domain Description: nitrilase Location: 178380-178977 bp Feature: domain Description: nitrilase Location: 1783 80-178977 bp Feature: gene Location: 179227-179367 bp Feature: domain Description: Phage_ASH Location: 179254-179347 bp Feature: domain Description: Phage_ASH Location: 179254-1793 47 bp Feature: gene Location: 179413-179883 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)