myRT

myRT report for GCA_013423645.1_ASM1342364v1

Download annotations/find similar RTs

Seq: JAAOQZ010000045.1 Escherichia coli strain MVAST5635 plasmid pCol156 NODE_30_length_45847_cov_51, whole genome shotgun sequence (45847 bp)
Overview 1 RT 1: 18681-22116 bp 2 RT 2: 32844-35519 bp Neighborhood of RT #1 [18681, 22181] InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [32844, 35527] InsE PHA02517 RVT-GII PRK10173 PRK10173 Feature: gene Location: 18681-19085 bp Feature: domain Description: InsE Location: 18711-19047 bp Feature: domain Description: InsE Location: 1 871 1 -1 9047 bp Feature: gene Location: 19114-19470 bp Feature: domain Description: PHA02517 Location: 19117-19426 bp Feature: domain Description: PHA0251 7 Location: 1 91 1 7-1 9426 bp Feature: gene Location: 19587-21110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19860-20592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9860-20592 bp Feature: domain Description: GIIM Note: maturase Location: 20667-20865 bp Feature: domain Description: GIIM Note: maturase Location: 20667-20865 bp Feature: gene Location: 21064-21489 bp Feature: gene Location: 21702-22181 bp Feature: domain Description: PHA02517 Location: 21762-22116 bp Feature: domain Description: PHA0251 7 Location: 21 762-221 1 6 bp Feature: gene Location: 32844-33170 bp Feature: domain Description: InsE Location: 32847-33168 bp Feature: domain Description: InsE Location: 32847-331 68 bp Feature: gene Location: 33170-33649 bp Feature: domain Description: PHA02517 Location: 33230-33584 bp Feature: domain Description: PHA0251 7 Location: 33230-33584 bp Feature: gene Location: 34241-34744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34514-34583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3451 4-34583 bp Feature: gene Location: 34783-35094 bp Feature: domain Description: PRK10173 Location: 34786-35005 bp Feature: domain Description: PRK1 01 73 Location: 34786-35005 bp Feature: gene Location: 35078-35527 bp Feature: domain Description: PRK10173 Location: 35081-35519 bp Feature: domain Description: PRK1 01 73 Location: 35081 -3551 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)

Seq: JAAOQZ010000032.1 Escherichia coli strain MVAST5635 NODE_4_length_301144_cov_24, whole genome shotgun sequence (301144 bp)
Overview 1 RT 1: 173849-179880 bp Neighborhood of RT #1 [173849, 179880] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 173849-174769 bp Feature: domain Description: AbiEii Location: 173891-174632 bp Feature: domain Description: AbiEii Location: 173891-174632 bp Feature: gene Location: 174756-175559 bp Feature: domain Description: AbiEi_3_N Location: 174789-175050 bp Feature: domain Description: AbiEi_3_N Location: 174789-175050 bp Feature: domain Description: AbiEi_3 Location: 175062-175518 bp Feature: domain Description: AbiEi_3 Location: 175062 -175518 bp Feature: gene Location: 175854-179063 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 176382-176871 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 176382 -176871 bp Feature: domain Description: nitrilase Location: 178377-178974 bp Feature: domain Description: nitrilase Location: 178377-178974 bp Feature: gene Location: 179224-179364 bp Feature: domain Description: Phage_ASH Location: 179251-179344 bp Feature: domain Description: Phage_ASH Location: 1792 51-179344 bp Feature: gene Location: 179410-179880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: JAAOQZ010000014.1 Escherichia coli strain MVAST5635 NODE_7_length_223604_cov_22, whole genome shotgun sequence (223604 bp)
Overview 1 RT 1: 44571-48553 bp Neighborhood of RT #1 [44571, 48579] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 44571-45602 bp Feature: domain Description: Asparaginase_2 Location: 44661-45594 bp Feature: domain Description: Asparaginase_2 Location: 44661-45594 bp Feature: gene Location: 45929-46078 bp Feature: gene Location: 46126-46572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46432-46534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4643 2-4653 4 bp Feature: gene Location: 46794-47165 bp Feature: gene Location: 47218-48579 bp Feature: domain Description: DcuC Location: 47221-48553 bp Feature: domain Description: DcuC Location: 47221-48553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)