myRT

myRT report for GCA_013425485.1_ASM1342548v1

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Seq: JACCKB010000010.1 Endozoicomonas sp. SM1973 K2-2-1_scaffold10, whole genome shotgun sequence (126109 bp)
Overview 1 RT 1: 29202-40034 bp Neighborhood of RT #1 [29202, 40675] WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT HEAT_2 HEAT_2 HEAT HEAT_2 HEAT_2 WGR_MMR_like RVT-Retrons COG5301 Feature: gene Location: 29202-35738 bp Feature: domain Description: WD40 Location: 29406-29853 bp Feature: domain Description: WD40 Location: 29406-29853 bp Feature: domain Description: HEAT_2 Location: 30240-30366 bp Feature: domain Description: HEAT_2 Location: 30240-30366 bp Feature: domain Description: HEAT_2 Location: 30408-30648 bp Feature: domain Description: HEAT_2 Location: 30408-30648 bp Feature: domain Description: HEAT_2 Location: 30681-30828 bp Feature: domain Description: HEAT_2 Location: 30681 -30828 bp Feature: domain Description: HEAT_2 Location: 31140-31338 bp Feature: domain Description: HEAT_2 Location: 31 1 40-31 338 bp Feature: domain Description: HEAT_2 Location: 31383-31617 bp Feature: domain Description: HEAT_2 Location: 31 383-31 61 7 bp Feature: domain Description: HEAT_2 Location: 31761-31938 bp Feature: domain Description: HEAT_2 Location: 31 761 -31 938 bp Feature: domain Description: HEAT_2 Location: 32106-32307 bp Feature: domain Description: HEAT_2 Location: 321 06-32307 bp Feature: domain Description: HEAT Location: 33018-33171 bp Feature: domain Description: HEAT Location: 3301 8-331 71 bp Feature: domain Description: HEAT_2 Location: 33384-33579 bp Feature: domain Description: HEAT_2 Location: 33384-33579 bp Feature: domain Description: HEAT_2 Location: 34047-34251 bp Feature: domain Description: HEAT_2 Location: 34047-34251 bp Feature: domain Description: HEAT Location: 34272-34452 bp Feature: domain Description: HEAT Location: 34272-34452 bp Feature: domain Description: HEAT_2 Location: 35217-35346 bp Feature: domain Description: HEAT_2 Location: 3521 7-35346 bp Feature: domain Description: HEAT_2 Location: 35553-35715 bp Feature: domain Description: HEAT_2 Location: 35553-3571 5 bp Feature: gene Location: 35731-37608 bp Feature: domain Description: WGR_MMR_like Location: 37420-37591 bp Feature: domain Description: WGR_MMR_like Location: 37420-37591 bp Feature: gene Location: 37665-38957 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 38109-38733 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 381 09-38733 bp Feature: gene Location: 39111-39416 bp Feature: gene Location: 39500-40675 bp Feature: domain Description: COG5301 Location: 39503-40034 bp Feature: domain Description: COG5301 Location: 39503-40034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WD40 (smart00320), HEAT_2 (pfam13646), HEAT (sd00044), WGR_MMR_like (cd07996), RVT-Retrons, COG5301 (Phage-related tail fibre protein )

Seq: JACCKB010000136.1 Endozoicomonas sp. SM1973 K2-2-1_scaffold136, whole genome shotgun sequence (4015 bp)
Overview 1 RT 1: 670-3453 bp Neighborhood of RT #1 [670, 3479] DDE_Tnp_IS66 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 670-855 bp Feature: domain Description: DDE_Tnp_IS66 Location: 694-838 bp Feature: domain Description: DDE_Tnp_IS66 Location: 694-838 bp Feature: gene Location: 882-1016 bp Feature: domain Description: PHA02517 Location: 894-1005 bp Feature: domain Description: PHA02 517 Location: 894-1005 bp Feature: gene Location: 1137-2378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1335-1992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1335-1992 bp Feature: domain Description: GIIM Note: maturase Location: 2070-2295 bp Feature: domain Description: GIIM Note: maturase Location: 2 070-2 2 95 bp Feature: gene Location: 2526-2738 bp Feature: gene Location: 2895-3479 bp Feature: domain Description: PHA02517 Location: 2913-3453 bp Feature: domain Description: PHA02 517 Location: 2 913-3453 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JACCKB010000183.1 Endozoicomonas sp. SM1973 K2-2-1_scaffold183, whole genome shotgun sequence (2158 bp)
Overview 1 RT 1: 157-1870 bp Neighborhood of RT #1 [157, 1870] RVT-GII Feature: gene Location: 157-1494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 436-1120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 6-1120 bp Feature: gene Location: 1685-1870 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JACCKB010000065.1 Endozoicomonas sp. SM1973 K2-2-1_scaffold65, whole genome shotgun sequence (22243 bp)
Overview 1 RT 1: 19180-21913 bp Neighborhood of RT #1 [19180, 22119] RVT-UG4 Feature: gene Location: 19180-19632 bp Feature: gene Location: 19972-21063 bp Feature: gene Location: 21103-22119 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 21451-21913 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 214 51-21913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4