myRT

myRT report for GCA_013426805.1_ASM1342680v1

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Seq: JACDZG010000009.1 Chromatiaceae bacterium isolate ppb02 NODE_11_length_100550_cov_276.270670, whole genome shotgun sequence (100550 bp)
Overview 1 RT 1: 4790-7987 bp Neighborhood of RT #1 [4790, 8016] COG4190 RVT-GII Gp49 Feature: gene Location: 4790-5098 bp Feature: gene Location: 5131-5463 bp Feature: domain Description: COG4190 Location: 5137-5455 bp Feature: domain Description: COG41 90 Location: 51 37-5455 bp Feature: gene Location: 6245-7378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6506-7172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6506-71 72 bp Feature: gene Location: 7460-7624 bp Feature: gene Location: 7732-8016 bp Feature: domain Description: Gp49 Location: 7735-7987 bp Feature: domain Description: Gp49 Location: 7735-7987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4190 (Predicted transcriptional regulator ), RVT-GII, Gp49 (pfam05973)

Seq: JACDZG010000107.1 Chromatiaceae bacterium isolate ppb02 NODE_192_length_25926_cov_246.111553, whole genome shotgun sequence (25926 bp)
Overview 1 RT 1: 2-5402 bp Neighborhood of RT #1 [2, 5590] CRISPR_Cas6 RVT-CRISPR TIGR03986 TIGR03986 RAMPs RAMPs Feature: gene Location: 2-1660 bp Feature: domain Description: CRISPR_Cas6 Location: 731-890 bp Feature: domain Description: CRISPR_Cas6 Location: 731-890 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1229-1619 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 12 2 9-1619 bp Feature: gene Location: 1682-4069 bp Feature: domain Description: TIGR03986 Location: 1703-2138 bp Feature: domain Description: TIGR03986 Location: 1703-2 138 bp Feature: domain Description: TIGR03986 Location: 2681-3632 bp Feature: domain Description: TIGR03986 Location: 2 681-3632 bp Feature: gene Location: 4088-5590 bp Feature: domain Description: RAMPs Location: 4142-4619 bp Feature: domain Description: RAMPs Location: 4142 -4619 bp Feature: domain Description: RAMPs Location: 4946-5402 bp Feature: domain Description: RAMPs Location: 4946-5402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CRISPR_Cas6 (pfam10040), RVT-CRISPR, TIGR03986 (CRISPR-associated protein), RAMPs (pfam03787)

Seq: JACDZG010000123.1 Chromatiaceae bacterium isolate ppb02 NODE_280_length_18096_cov_273.728507, whole genome shotgun sequence (18096 bp)
Overview 1 RT 1: 4197-11500 bp Neighborhood of RT #1 [4197, 11500] YfmG YfmG Hrd RVT-DGRs YfmG Feature: gene Location: 4197-8021 bp Feature: domain Description: YfmG Location: 6003-6744 bp Feature: domain Description: YfmG Location: 6003 -6744 bp Feature: domain Description: YfmG Location: 7092-7851 bp Feature: domain Description: YfmG Location: 7092-7851 bp Feature: gene Location: 8251-8760 bp Feature: domain Description: Hrd Location: 8503-8707 bp Feature: domain Description: Hrd Location: 8503 -8707 bp Feature: gene Location: 8780-9769 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8960-9551 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8960-9551 bp Feature: gene Location: 9978-10991 bp Feature: domain Description: YfmG Location: 10233-10977 bp Feature: domain Description: YfmG Location: 1023 3 -10977 bp Feature: gene Location: 11255-11500 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), Hrd (LOAD_Hrd), RVT-DGRs

Seq: JACDZG010000002.1 Chromatiaceae bacterium isolate ppb02 NODE_2_length_185263_cov_251.768045, whole genome shotgun sequence (185263 bp)
Overview 1 RT 1: 88877-98593 bp Neighborhood of RT #1 [88877, 98643] AAA-ATPase_like PDDEXK_9 pfam13191 FGE-sulfatase RVT-DGRs Avd_like pfam13191 FGE-sulfatase Feature: gene Location: 88877-90436 bp Feature: domain Description: AAA-ATPase_like Location: 88898-89687 bp Feature: domain Description: AAA-ATPase_like Location: 88898-89687 bp Feature: domain Description: PDDEXK_9 Location: 90125-90398 bp Feature: domain Description: PDDEXK_9 Location: 90125-90398 bp Feature: gene Location: 90925-93705 bp Feature: domain Description: pfam13191 Location: 91357-91843 bp Feature: domain Description: pfam13191 Location: 91357-9184 3 bp Feature: domain Description: FGE-sulfatase Location: 93028-93655 bp Feature: domain Description: FGE-sulfatase Location: 93028-93655 bp Feature: gene Location: 93713-94876 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 93923-94568 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 93923-94 568 bp Feature: gene Location: 94875-95225 bp Feature: domain Description: Avd_like Location: 94896-95208 bp Feature: domain Description: Avd_like Location: 94 896-95208 bp Feature: gene Location: 95782-98643 bp Feature: domain Description: pfam13191 Location: 96253-96724 bp Feature: domain Description: pfam13191 Location: 96253-96724 bp Feature: domain Description: FGE-sulfatase Location: 97927-98593 bp Feature: domain Description: FGE-sulfatase Location: 97927-98593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011), pfam13191 (AAA_16;AAA ATPase domain), FGE-sulfatase (pfam03781), RVT-DGRs, Avd_like (cd16376)

Seq: JACDZG010000026.1 Chromatiaceae bacterium isolate ppb02 NODE_36_length_67374_cov_290.589492, whole genome shotgun sequence (67374 bp)
Overview 1 RT 1: 14040-17608 bp Neighborhood of RT #1 [14040, 17622] Cas2_I_II_III Cas_Cas1 RVT-CRISPR PDDEXK_2 T_den_put_tspse Feature: gene Location: 14040-14432 bp Feature: domain Description: Cas2_I_II_III Location: 14100-14292 bp Feature: domain Description: Cas2_I_II_III Location: 14100-14292 bp Feature: gene Location: 14429-15457 bp Feature: domain Description: Cas_Cas1 Location: 14438-15299 bp Feature: domain Description: Cas_Cas1 Location: 14438-15 299 bp Feature: gene Location: 15746-16372 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 15752-16274 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 15 75 2-16274 bp Feature: gene Location: 16637-17014 bp Feature: domain Description: PDDEXK_2 Location: 16814-17006 bp Feature: domain Description: PDDEXK_2 Location: 16814-17006 bp Feature: gene Location: 17011-17622 bp Feature: domain Description: T_den_put_tspse Location: 17074-17608 bp Feature: domain Description: T_den_put_tspse Location: 17074-17608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas_Cas1 (pfam01867), RVT-CRISPR, PDDEXK_2 (pfam12784), T_den_put_tspse (TIGR01784)

Seq: JACDZG010000027.1 Chromatiaceae bacterium isolate ppb02 NODE_37_length_67268_cov_255.891836, whole genome shotgun sequence (67268 bp)
Overview 1 RT 1: 49609-54404 bp Neighborhood of RT #1 [49609, 54436] Peptidase_C14 YfmG Avd_like RVT-DGRs dnstrm_HI1420 Feature: gene Location: 49609-51933 bp Feature: domain Description: Peptidase_C14 Location: 49630-50296 bp Feature: domain Description: Peptidase_C14 Location: 496 30-50296 bp Feature: domain Description: YfmG Location: 51103-51928 bp Feature: domain Description: YfmG Location: 51103-51928 bp Feature: gene Location: 51986-52321 bp Feature: domain Description: Avd_like Location: 52010-52313 bp Feature: domain Description: Avd_like Location: 52010-52313 bp Feature: gene Location: 52318-53415 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52525-53128 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52525-53128 bp Feature: gene Location: 53679-54098 bp Feature: gene Location: 54182-54436 bp Feature: domain Description: dnstrm_HI1420 Location: 54185-54404 bp Feature: domain Description: dnstrm_HI1420 Location: 54185-54404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_C14 (pfam00656), YfmG (COG1262), Avd_like (cd16376), RVT-DGRs, dnstrm_HI1420 (TIGR02684)

Seq: JACDZG010000147.1 Chromatiaceae bacterium isolate ppb02 NODE_384_length_13173_cov_248.427123, whole genome shotgun sequence (13173 bp)
Overview 1 RT 1: 11365-13140 bp Neighborhood of RT #1 [11365, 13172] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Feature: gene Location: 11365-11643 bp Feature: domain Description: Cas2_I_II_III Location: 11377-11599 bp Feature: domain Description: Cas2_I_II_III Location: 1137 7 -11599 bp Feature: gene Location: 11643-13172 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 11694-11922 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 11694-11922 bp Feature: domain Description: Cas1_I-II-III Location: 12216-13140 bp Feature: domain Description: Cas1_I-II-III Location: 12216-13140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: JACDZG010000157.1 Chromatiaceae bacterium isolate ppb02 NODE_432_length_11392_cov_302.056541, whole genome shotgun sequence (11392 bp)
Overview 1 RT 1: 236-3054 bp Neighborhood of RT #1 [236, 3054] RVT-GII PIN_VapC-like Feature: gene Location: 236-1240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 239-863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 239-8 63 bp Feature: gene Location: 2412-2867 bp Feature: domain Description: PIN_VapC-like Location: 2415-2787 bp Feature: domain Description: PIN_VapC-like Location: 2415-278 7 bp Feature: gene Location: 2905-3054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PIN_VapC-like (cd18715)

Seq: JACDZG010000172.1 Chromatiaceae bacterium isolate ppb02 NODE_532_length_8923_cov_240.193843, whole genome shotgun sequence (8923 bp)
Overview 1 RT 1: 383-3538 bp Neighborhood of RT #1 [383, 3538] HRDC Avd_like RVT-DGRs Feature: gene Location: 383-997 bp Feature: domain Description: HRDC Location: 758-950 bp Feature: domain Description: HRDC Location: 758-9 50 bp Feature: gene Location: 984-1346 bp Feature: domain Description: Avd_like Location: 1017-1323 bp Feature: domain Description: Avd_like Location: 1017-1323 bp Feature: gene Location: 1348-2361 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1555-2155 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1555-2155 bp Feature: gene Location: 2688-3080 bp Feature: gene Location: 3128-3538 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HRDC (smart00341), Avd_like (cd16376), RVT-DGRs

Seq: JACDZG010000052.1 Chromatiaceae bacterium isolate ppb02 NODE_77_length_47498_cov_231.515376, whole genome shotgun sequence (47498 bp)
Overview 1 RT 1: 34428-38328 bp Neighborhood of RT #1 [34428, 38345] BLUF PsiE YfmG RVT-DGRs YfmG Avd_like Feature: gene Location: 34428-35315 bp Feature: domain Description: BLUF Location: 34431-34704 bp Feature: domain Description: BLUF Location: 34431-34704 bp Feature: domain Description: PsiE Location: 35058-35259 bp Feature: domain Description: PsiE Location: 35058-35259 bp Feature: gene Location: 35679-36731 bp Feature: domain Description: YfmG Location: 36000-36711 bp Feature: domain Description: YfmG Location: 36000-36711 bp Feature: gene Location: 36833-37828 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 37043-37685 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 37043-37685 bp Feature: gene Location: 37839-38069 bp Feature: domain Description: YfmG Location: 37842-37947 bp Feature: domain Description: YfmG Location: 37842-37947 bp Feature: gene Location: 38103-38345 bp Feature: domain Description: Avd_like Location: 38118-38328 bp Feature: domain Description: Avd_like Location: 38118-38328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BLUF (smart01034), PsiE (pfam06146), YfmG (COG1262), RVT-DGRs, Avd_like (cd16376)

Seq: JACDZG010000217.1 Chromatiaceae bacterium isolate ppb02 NODE_896_length_4801_cov_482.018963, whole genome shotgun sequence (4801 bp)
Overview 1 RT 1: 23-2002 bp Neighborhood of RT #1 [23, 2247] RVT-GII PDDEXK_2 PDDEXK_2 Feature: gene Location: 23-508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 440-485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 440-485 bp Feature: gene Location: 702-1685 bp Feature: domain Description: PDDEXK_2 Location: 723-1389 bp Feature: domain Description: PDDEXK_2 Location: 723-1389 bp Feature: gene Location: 1720-2247 bp Feature: domain Description: PDDEXK_2 Location: 1786-2002 bp Feature: domain Description: PDDEXK_2 Location: 1786-2002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PDDEXK_2 (pfam12784)

Seq: JACDZG010000062.1 Chromatiaceae bacterium isolate ppb02 NODE_98_length_39994_cov_266.827136, whole genome shotgun sequence (39994 bp)
Overview 1 RT 1: 22589-25738 bp Neighborhood of RT #1 [22589, 25738] DUF4351 YfmG RVT-DGRs Avd_like Feature: gene Location: 22589-23281 bp Feature: domain Description: DUF4351 Location: 23111-23273 bp Feature: domain Description: DUF4351 Location: 23111-23273 bp Feature: gene Location: 23769-23999 bp Feature: domain Description: YfmG Location: 23772-23871 bp Feature: domain Description: YfmG Location: 23772-23871 bp Feature: gene Location: 24024-25037 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24228-24834 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24228-24834 bp Feature: gene Location: 25039-25221 bp Feature: domain Description: Avd_like Location: 25051-25198 bp Feature: domain Description: Avd_like Location: 25051-25198 bp Feature: gene Location: 25472-25738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4351 (pfam14261), YfmG (COG1262), RVT-DGRs, Avd_like (cd16376)