myRT

myRT report for GCA_013432585.1_ASM1343258v1

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Seq: JABENZ010000017.1 Listeria monocytogenes strain 531 NODE_17_length_29770_cov_20.430456, whole genome shotgun sequence (29770 bp)
Overview 1 RT 1: 6897-16790 bp Neighborhood of RT #1 [6897, 16795] TpcC LysR RVT-GII PRK06482 COG4932 CollagenBindB CollagenBindB CollagenBindB CollagenBindB CollagenBindB CollagenBindB COG4932 Feature: gene Location: 6897-7814 bp Feature: domain Description: TpcC Location: 7134-7800 bp Feature: domain Description: TpcC Location: 71 34-7800 bp Feature: gene Location: 8048-8953 bp Feature: domain Description: LysR Location: 8051-8930 bp Feature: domain Description: LysR Location: 8051 -8930 bp Feature: gene Location: 9408-10127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9729-10125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9729-1 01 25 bp Feature: gene Location: 10022-10366 bp Feature: domain Description: PRK06482 Location: 10103-10355 bp Feature: domain Description: PRK06482 Location: 1 01 03-1 0355 bp Feature: gene Location: 11039-16795 bp Feature: domain Description: COG4932 Location: 11078-14864 bp Feature: domain Description: COG4932 Location: 1 1 078-1 4864 bp Feature: domain Description: CollagenBindB Location: 14918-15200 bp Feature: domain Description: CollagenBindB Location: 1 491 8-1 5200 bp Feature: domain Description: CollagenBindB Location: 15215-15491 bp Feature: domain Description: CollagenBindB Location: 1 521 5-1 5491 bp Feature: domain Description: CollagenBindB Location: 15506-15761 bp Feature: domain Description: CollagenBindB Location: 1 5506-1 5761 bp Feature: domain Description: CollagenBindB Location: 15776-16049 bp Feature: domain Description: CollagenBindB Location: 1 5776-1 6049 bp Feature: domain Description: CollagenBindB Location: 16064-16319 bp Feature: domain Description: CollagenBindB Location: 1 6064-1 631 9 bp Feature: domain Description: CollagenBindB Location: 16337-16586 bp Feature: domain Description: CollagenBindB Location: 1 6337-1 6586 bp Feature: domain Description: COG4932 Location: 16655-16790 bp Feature: domain Description: COG4932 Location: 1 6655-1 6790 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06482 (SDR family oxidoreductase), COG4932 (Uncharacterized surface anchored protein ), CollagenBindB (cl15753), TpcC (pfam12642), LysR (COG0583), RVT-GII