myRT

myRT report for GCA_013432595.1_ASM1343259v1

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Seq: JABENY010000022.1 Listeria monocytogenes strain 539 NODE_22_length_29772_cov_22.192140, whole genome shotgun sequence (29772 bp)
Overview 1 RT 1: 6899-16792 bp Neighborhood of RT #1 [6899, 16797] TpcC LysR RVT-GII PRK06482 COG4932 CollagenBindB CollagenBindB CollagenBindB CollagenBindB CollagenBindB CollagenBindB COG4932 Feature: gene Location: 6899-7816 bp Feature: domain Description: TpcC Location: 7136-7802 bp Feature: domain Description: TpcC Location: 71 36-7802 bp Feature: gene Location: 8050-8955 bp Feature: domain Description: LysR Location: 8053-8932 bp Feature: domain Description: LysR Location: 8053-8932 bp Feature: gene Location: 9410-10129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9731-10127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9731 -1 01 27 bp Feature: gene Location: 10024-10368 bp Feature: domain Description: PRK06482 Location: 10105-10357 bp Feature: domain Description: PRK06482 Location: 1 01 05-1 0357 bp Feature: gene Location: 11041-16797 bp Feature: domain Description: COG4932 Location: 11080-14866 bp Feature: domain Description: COG4932 Location: 1 1 080-1 4866 bp Feature: domain Description: CollagenBindB Location: 14920-15202 bp Feature: domain Description: CollagenBindB Location: 1 4920-1 5202 bp Feature: domain Description: CollagenBindB Location: 15217-15493 bp Feature: domain Description: CollagenBindB Location: 1 521 7-1 5493 bp Feature: domain Description: CollagenBindB Location: 15508-15763 bp Feature: domain Description: CollagenBindB Location: 1 5508-1 5763 bp Feature: domain Description: CollagenBindB Location: 15778-16051 bp Feature: domain Description: CollagenBindB Location: 1 5778-1 6051 bp Feature: domain Description: CollagenBindB Location: 16066-16321 bp Feature: domain Description: CollagenBindB Location: 1 6066-1 6321 bp Feature: domain Description: CollagenBindB Location: 16339-16588 bp Feature: domain Description: CollagenBindB Location: 1 6339-1 6588 bp Feature: domain Description: COG4932 Location: 16657-16792 bp Feature: domain Description: COG4932 Location: 1 6657-1 6792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06482 (SDR family oxidoreductase), COG4932 (Uncharacterized surface anchored protein ), CollagenBindB (cl15753), TpcC (pfam12642), LysR (COG0583), RVT-GII