myRT

myRT report for GCA_013432605.1_ASM1343260v1

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Seq: JABMDV010000002.1 Listeria monocytogenes strain 555 NODE_2_length_289460_cov_31.411163, whole genome shotgun sequence (289460 bp)
Overview 1 RT 1: 266584-276477 bp Neighborhood of RT #1 [266584, 276482] TpcC LysR RVT-GII PRK06482 COG4932 CollagenBindB CollagenBindB CollagenBindB CollagenBindB CollagenBindB CollagenBindB COG4932 Feature: gene Location: 266584-267501 bp Feature: domain Description: TpcC Location: 266821-267487 bp Feature: domain Description: TpcC Location: 266821 -267487 bp Feature: gene Location: 267735-268640 bp Feature: domain Description: LysR Location: 267738-268617 bp Feature: domain Description: LysR Location: 267738-26861 7 bp Feature: gene Location: 269095-269814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 269416-269812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26941 6-26981 2 bp Feature: gene Location: 269709-270053 bp Feature: domain Description: PRK06482 Location: 269790-270042 bp Feature: domain Description: PRK06482 Location: 269790-270042 bp Feature: gene Location: 270726-276482 bp Feature: domain Description: COG4932 Location: 270765-274554 bp Feature: domain Description: COG4932 Location: 270765-274554 bp Feature: domain Description: CollagenBindB Location: 274605-274887 bp Feature: domain Description: CollagenBindB Location: 274605-274887 bp Feature: domain Description: CollagenBindB Location: 274902-275178 bp Feature: domain Description: CollagenBindB Location: 274902-2751 78 bp Feature: domain Description: CollagenBindB Location: 275193-275448 bp Feature: domain Description: CollagenBindB Location: 2751 93-275448 bp Feature: domain Description: CollagenBindB Location: 275463-275736 bp Feature: domain Description: CollagenBindB Location: 275463-275736 bp Feature: domain Description: CollagenBindB Location: 275751-276006 bp Feature: domain Description: CollagenBindB Location: 275751 -276006 bp Feature: domain Description: CollagenBindB Location: 276024-276273 bp Feature: domain Description: CollagenBindB Location: 276024-276273 bp Feature: domain Description: COG4932 Location: 276342-276477 bp Feature: domain Description: COG4932 Location: 276342-276477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TpcC (pfam12642), LysR (COG0583), RVT-GII, PRK06482 (SDR family oxidoreductase), COG4932 (Uncharacterized surface anchored protein ), CollagenBindB (cl15753)