myRT

myRT report for GCA_013432705.1_ASM1343270v1

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Seq: JABEOE010000005.1 Listeria monocytogenes strain 499 NODE_5_length_206825_cov_9.412094, whole genome shotgun sequence (206825 bp)
Overview 1 RT 1: 183952-193845 bp Neighborhood of RT #1 [183952, 193850] TpcC LysR RVT-GII PRK06482 COG4932 CollagenBindB CollagenBindB CollagenBindB CollagenBindB CollagenBindB CollagenBindB COG4932 Feature: gene Location: 183952-184869 bp Feature: domain Description: TpcC Location: 184189-184855 bp Feature: domain Description: TpcC Location: 1 841 89-1 84855 bp Feature: gene Location: 185103-186008 bp Feature: domain Description: LysR Location: 185106-185985 bp Feature: domain Description: LysR Location: 1 851 06-1 85985 bp Feature: gene Location: 186463-187182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186784-187180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 86784-1 871 80 bp Feature: gene Location: 187077-187421 bp Feature: domain Description: PRK06482 Location: 187158-187410 bp Feature: domain Description: PRK06482 Location: 1 871 58-1 8741 0 bp Feature: gene Location: 188094-193850 bp Feature: domain Description: COG4932 Location: 188133-191922 bp Feature: domain Description: COG4932 Location: 1 881 33-1 91 922 bp Feature: domain Description: CollagenBindB Location: 191973-192255 bp Feature: domain Description: CollagenBindB Location: 1 91 973-1 92255 bp Feature: domain Description: CollagenBindB Location: 192270-192546 bp Feature: domain Description: CollagenBindB Location: 1 92270-1 92546 bp Feature: domain Description: CollagenBindB Location: 192561-192816 bp Feature: domain Description: CollagenBindB Location: 1 92561 -1 9281 6 bp Feature: domain Description: CollagenBindB Location: 192831-193104 bp Feature: domain Description: CollagenBindB Location: 1 92831 -1 931 04 bp Feature: domain Description: CollagenBindB Location: 193119-193374 bp Feature: domain Description: CollagenBindB Location: 1 931 1 9-1 93374 bp Feature: domain Description: CollagenBindB Location: 193392-193641 bp Feature: domain Description: CollagenBindB Location: 1 93392-1 93641 bp Feature: domain Description: COG4932 Location: 193710-193845 bp Feature: domain Description: COG4932 Location: 1 9371 0-1 93845 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TpcC (pfam12642), LysR (COG0583), RVT-GII, PRK06482 (SDR family oxidoreductase), COG4932 (Uncharacterized surface anchored protein ), CollagenBindB (cl15753)