myRT

myRT report for GCA_013450035.1_ASM1345003v1

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Seq: JACDOS010000001.1 Xenorhabdus nematophila strain SC 0516 Scaffold_1_pilon, whole genome shotgun sequence (4162111 bp)
Overview 1 RT 1: 9535-14099 bp 2 RT 2: 1459414-1465166 bp 3 RT 3: 1901461-1905328 bp 4 RT 4: 3113596-3119925 bp 5 RT 5: 3398822-3402354 bp 6 RT 6: 3645160-3651209 bp 7 RT 7: 4051445-4055687 bp Neighborhood of RT #1 [9535, 14099] T6SS_TssF RVT-GII RVT-GII Neighborhood of RT #2 [1459414, 1465166] DUF4158 DDE_Tnp_Tn3 SR_Res_par RVT-GII Neighborhood of RT #3 [1901461, 1905328] HTH_33 RhtB RVT-GII Neighborhood of RT #4 [3113596, 3119925] PRK10635 PRK10509 RVT-GII GIIM RVT-GII Resolvase Recombinase Zn_ribbon_recom RVT-GII Neighborhood of RT #5 [3398822, 3402377] PRK09730 MFS_MdtH_MDR_like RVT-GII GIIM efflux_Bcr_CflA Neighborhood of RT #6 [3645160, 3651220] PRK14876 RVT-GII RVT-GII valS PRK05728 Neighborhood of RT #7 [4051445, 4055719] type_I_hlyD NHLM_micro_HlyD RVT-GII group_II_RT_mat COG3547 Feature: gene Location: 9535-10545 bp Feature: domain Description: T6SS_TssF Location: 9544-10414 bp Feature: domain Description: T6SS_TssF Location: 9544-1 041 4 bp Feature: gene Location: 11101-11514 bp Feature: gene Location: 11694-12767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11895-12447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 895-1 2447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12447-12687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2447-1 2687 bp Feature: gene Location: 12836-13126 bp Feature: gene Location: 13932-14099 bp Feature: gene Location: 1459414-1462470 bp Feature: domain Description: DUF4158 Location: 1459447-1459933 bp Feature: domain Description: DUF41 58 Location: 1 459447-1 459933 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1461184-1462351 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1 461 1 84-1 462351 bp Feature: gene Location: 1462598-1463110 bp Feature: domain Description: SR_Res_par Location: 1462655-1463042 bp Feature: domain Description: SR_Res_par Location: 1 462655-1 463042 bp Feature: gene Location: 1463301-1463606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1463379-1463535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 463379-1 463535 bp Feature: gene Location: 1463727-1463930 bp Feature: gene Location: 1464081-1465166 bp Feature: gene Location: 1901461-1901673 bp Feature: domain Description: HTH_33 Location: 1901473-1901593 bp Feature: domain Description: HTH_33 Location: 1 901 473-1 901 593 bp Feature: gene Location: 1901821-1902402 bp Feature: domain Description: RhtB Location: 1901848-1902352 bp Feature: domain Description: RhtB Location: 1 901 848-1 902352 bp Feature: gene Location: 1902408-1902896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1902609-1902870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 902609-1 902870 bp Feature: gene Location: 1904231-1904392 bp Feature: gene Location: 1904921-1905328 bp Feature: gene Location: 3113596-3114072 bp Feature: domain Description: PRK10635 Location: 3113599-3114067 bp Feature: domain Description: PRK1 0635 Location: 31 1 3599-31 1 4067 bp Feature: gene Location: 3114148-3114342 bp Feature: domain Description: PRK10509 Location: 3114151-3114340 bp Feature: domain Description: PRK1 0509 Location: 31 1 41 51 -31 1 4340 bp Feature: gene Location: 3114599-3115237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3114677-3114806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 4677-31 1 4806 bp Feature: domain Description: GIIM Note: maturase Location: 3114860-3115085 bp Feature: domain Description: GIIM Note: maturase Location: 31 1 4860-31 1 5085 bp Feature: gene Location: 3115251-3115463 bp Feature: gene Location: 3115569-3116156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3115923-3116100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 5923-31 1 61 00 bp Feature: gene Location: 3116153-3116350 bp Feature: gene Location: 3116398-3116700 bp Feature: gene Location: 3117238-3117486 bp Feature: domain Description: Resolvase Location: 3117250-3117442 bp Feature: domain Description: Resolvase Location: 31 1 7250-31 1 7442 bp Feature: gene Location: 3117625-3118989 bp Feature: domain Description: Recombinase Location: 3117775-3118141 bp Feature: domain Description: Recombinase Location: 31 1 7775-31 1 81 41 bp Feature: domain Description: Zn_ribbon_recom Location: 3118186-3118369 bp Feature: domain Description: Zn_ribbon_recom Location: 31 1 81 86-31 1 8369 bp Feature: gene Location: 3119115-3119462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3119307-3119460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 9307-31 1 9460 bp Feature: gene Location: 3119466-3119600 bp Feature: gene Location: 3119647-3119925 bp Feature: gene Location: 3398822-3399571 bp Feature: domain Description: PRK09730 Location: 3398834-3399569 bp Feature: domain Description: PRK09730 Location: 3398834-3399569 bp Feature: gene Location: 3399575-3399958 bp Feature: domain Description: MFS_MdtH_MDR_like Location: 3399671-3399923 bp Feature: domain Description: MFS_MdtH_MDR_like Location: 3399671 -3399923 bp Feature: gene Location: 3399930-3400556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3399939-3400155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3399939-34001 55 bp Feature: domain Description: GIIM Note: maturase Location: 3400236-3400440 bp Feature: domain Description: GIIM Note: maturase Location: 3400236-3400440 bp Feature: gene Location: 3400485-3400730 bp Feature: gene Location: 3401184-3402377 bp Feature: domain Description: efflux_Bcr_CflA Location: 3401229-3402354 bp Feature: domain Description: efflux_Bcr_CflA Location: 3401 229-3402354 bp Feature: gene Location: 3645160-3645315 bp Feature: gene Location: 3645376-3646368 bp Feature: domain Description: PRK14876 Location: 3645457-3646354 bp Feature: domain Description: PRK1 4876 Location: 3645457-3646354 bp Feature: gene Location: 3646647-3647219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3646650-3646857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3646650-3646857 bp Feature: gene Location: 3647273-3647806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3647393-3647792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3647393-3647792 bp Feature: gene Location: 3647830-3650727 bp Feature: domain Description: valS Location: 3647869-3650716 bp Feature: domain Description: valS Location: 3647869-365071 6 bp Feature: gene Location: 3650741-3651220 bp Feature: domain Description: PRK05728 Location: 3650744-3651209 bp Feature: domain Description: PRK05728 Location: 3650744-3651 209 bp Feature: gene Location: 4051445-4052167 bp Feature: domain Description: type_I_hlyD Location: 4051499-4052156 bp Feature: domain Description: type_I_hlyD Location: 4051 499-40521 56 bp Feature: gene Location: 4052185-4052625 bp Feature: domain Description: NHLM_micro_HlyD Location: 4052293-4052554 bp Feature: domain Description: NHLM_micro_HlyD Location: 4052293-4052554 bp Feature: gene Location: 4052966-4054030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4053479-4054025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4053479-4054025 bp Feature: gene Location: 4054061-4054528 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4054145-4054391 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 40541 45-4054391 bp Feature: gene Location: 4054697-4055719 bp Feature: domain Description: COG3547 Location: 4054709-4055687 bp Feature: domain Description: COG3547 Location: 4054709-4055687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T6SS_TssF (pfam05947), RVT-GII, DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), SR_Res_par (cd03767), HTH_33 (pfam13592), RhtB (COG1280), PRK10635 (bacterioferritin; Provisional), PRK10509 (bacterioferritin-associated ferredoxin; Provisional), GIIM (pfam08388)
Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), PRK09730 (SDR family oxidoreductase), MFS_MdtH_MDR_like (cd17329), efflux_Bcr_CflA (TIGR00710), PRK14876 (conjugal transfer mating pair stabilization protein TraN; Provisional), valS (TIGR00422), PRK05728 (DNA polymerase III subunit chi; Validated), type_I_hlyD (TIGR01843)
NHLM_micro_HlyD (TIGR03794), group_II_RT_mat (TIGR04416), COG3547 (Transposase )