myRT

myRT report for GCA_013522575.1_HS_4

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Seq: JAAMRK010000013.1 Pseudomonas aeruginosa strain HS4 NODE_13_length_163521_cov_29.927121, whole genome shotgun sequence (163521 bp)
Overview 1 RT 1: 63629-74876 bp 2 RT 2: 91135-99957 bp Neighborhood of RT #1 [63629, 74878] NERD zf-C4_Topoisom COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [91135, 99986] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 63629-64399 bp Feature: domain Description: NERD Location: 63728-64061 bp Feature: domain Description: NERD Location: 63728-64061 bp Feature: domain Description: zf-C4_Topoisom Location: 64280-64394 bp Feature: domain Description: zf-C4_Topoisom Location: 64280-64394 bp Feature: gene Location: 64571-65692 bp Feature: domain Description: COG3177 Location: 64589-65681 bp Feature: domain Description: COG31 77 Location: 64589-65681 bp Feature: gene Location: 66415-68100 bp Feature: domain Description: RVT_N Location: 66472-66712 bp Feature: domain Description: RVT_N Location: 66472-6671 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66760-67396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66760-67396 bp Feature: domain Description: GIIM Note: maturase Location: 67450-67681 bp Feature: domain Description: GIIM Note: maturase Location: 67450-67681 bp Feature: domain Description: HNH Note: nucleases Location: 67933-68071 bp Feature: domain Description: HNH Note: nucleases Location: 67933-68071 bp Feature: gene Location: 69181-72918 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 69289-69946 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 69289-69946 bp Feature: domain Description: PRK09776 Location: 70159-70630 bp Feature: domain Description: PRK09776 Location: 701 59-70630 bp Feature: domain Description: PAS Location: 70687-71212 bp Feature: domain Description: PAS Location: 70687-71 21 2 bp Feature: domain Description: PRK10060 Location: 71224-72868 bp Feature: domain Description: PRK1 0060 Location: 71 224-72868 bp Feature: gene Location: 73025-74878 bp Feature: domain Description: PRK05658 Location: 73037-74876 bp Feature: domain Description: PRK05658 Location: 73037-74876 bp Feature: gene Location: 91135-92349 bp Feature: domain Description: PRK10770 Location: 91147-92341 bp Feature: domain Description: PRK1 0770 Location: 91 1 47-92341 bp Feature: gene Location: 92408-95182 bp Feature: domain Description: LptD Location: 92603-95168 bp Feature: domain Description: LptD Location: 92603-951 68 bp Feature: gene Location: 95315-97027 bp Feature: domain Description: RVT_N Location: 95372-95615 bp Feature: domain Description: RVT_N Location: 95372-9561 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95660-96293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95660-96293 bp Feature: domain Description: YkfC Location: 96506-96656 bp Feature: domain Description: YkfC Location: 96506-96656 bp Feature: domain Description: HNH Note: nucleases Location: 96833-96971 bp Feature: domain Description: HNH Note: nucleases Location: 96833-96971 bp Feature: gene Location: 98299-99315 bp Feature: domain Description: COG3178 Location: 98302-99301 bp Feature: domain Description: COG31 78 Location: 98302-99301 bp Feature: gene Location: 99312-99986 bp Feature: domain Description: NTP_transferase_like_1 Location: 99318-99957 bp Feature: domain Description: NTP_transferase_like_1 Location: 9931 8-99957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), zf-C4_Topoisom (pfam01396), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: JAAMRK010000027.1 Pseudomonas aeruginosa strain HS4 NODE_27_length_93846_cov_24.496292, whole genome shotgun sequence (93846 bp)
Overview 1 RT 1: 87124-93551 bp Neighborhood of RT #1 [87124, 93655] restrict_AAA_1 restrict_AAA_1 COG4127 RVT-UG5 nitrilase Feature: gene Location: 87124-88875 bp Feature: domain Description: restrict_AAA_1 Location: 87127-87874 bp Feature: domain Description: restrict_AAA_1 Location: 8712 7-87874 bp Feature: domain Description: restrict_AAA_1 Location: 88201-88588 bp Feature: domain Description: restrict_AAA_1 Location: 882 01-88588 bp Feature: gene Location: 89813-90805 bp Feature: domain Description: COG4127 Location: 89819-90794 bp Feature: domain Description: COG412 7 Location: 89819-90794 bp Feature: gene Location: 91175-93655 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 91178-91607 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 91178-91607 bp Feature: domain Description: nitrilase Location: 92969-93551 bp Feature: domain Description: nitrilase Location: 92 969-93551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT restrict_AAA_1 (TIGR04435), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), RVT-UG5, nitrilase (cl11424)

Seq: JAAMRK010000054.1 Pseudomonas aeruginosa strain HS4 NODE_54_length_35599_cov_26.554240, whole genome shotgun sequence (35599 bp)
Overview 1 RT 1: 24467-30342 bp Neighborhood of RT #1 [24467, 30386] DEXHc_Snf RVT_N RVT-GII GIIM HNHc KOG0389 SF2_C_SNF resist_ArsH Feature: gene Location: 24467-24772 bp Feature: gene Location: 24909-25964 bp Feature: domain Description: DEXHc_Snf Location: 25128-25383 bp Feature: domain Description: DEXHc_Snf Location: 25128-253 83 bp Feature: gene Location: 26561-28279 bp Feature: domain Description: RVT_N Location: 26618-26855 bp Feature: domain Description: RVT_N Location: 26618-26855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26906-27557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26906-27557 bp Feature: domain Description: GIIM Note: maturase Location: 27611-27842 bp Feature: domain Description: GIIM Note: maturase Location: 27611-27842 bp Feature: domain Description: HNHc Note: nucleases Location: 28076-28232 bp Feature: domain Description: HNHc Note: nucleases Location: 28076-2823 2 bp Feature: gene Location: 28365-29606 bp Feature: domain Description: KOG0389 Location: 28380-28500 bp Feature: domain Description: KOG03 89 Location: 283 80-28500 bp Feature: domain Description: SF2_C_SNF Location: 29046-29442 bp Feature: domain Description: SF2_C_SNF Location: 29046-29442 bp Feature: gene Location: 29664-30386 bp Feature: domain Description: resist_ArsH Location: 29688-30342 bp Feature: domain Description: resist_ArsH Location: 29688-3 03 42 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), resist_ArsH (TIGR02690)