myRT

myRT report for GCA_013522595.1_HS_3

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Seq: JAAMRJ010000032.1 Pseudomonas aeruginosa strain HS3 NODE_32_length_80863_cov_69.421782, whole genome shotgun sequence (80863 bp)
Overview 1 RT 1: 301-9383 bp Neighborhood of RT #1 [301, 9385] HipA_C RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 301-618 bp Feature: domain Description: HipA_C Location: 334-502 bp Feature: domain Description: HipA_C Location: 334-502 bp Feature: gene Location: 922-2607 bp Feature: RT Description: RVT_N Location: 979-1219 bp Feature: RT Description: RVT_N Location: 979-1 21 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1267-1903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 267-1 903 bp Feature: domain Description: GIIM Note: maturase Location: 1957-2188 bp Feature: domain Description: GIIM Note: maturase Location: 1 957-21 88 bp Feature: domain Description: HNH Note: nucleases Location: 2440-2578 bp Feature: domain Description: HNH Note: nucleases Location: 2440-2578 bp Feature: gene Location: 3688-7425 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 3796-4453 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 3796-4453 bp Feature: domain Description: PRK09776 Location: 4666-5137 bp Feature: domain Description: PRK09776 Location: 4666-51 37 bp Feature: domain Description: PAS Location: 5182-5719 bp Feature: domain Description: PAS Location: 51 82-571 9 bp Feature: domain Description: PRK10060 Location: 5728-7375 bp Feature: domain Description: PRK1 0060 Location: 5728-7375 bp Feature: gene Location: 7532-9385 bp Feature: domain Description: PRK05658 Location: 7544-9383 bp Feature: domain Description: PRK05658 Location: 7544-9383 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)