myRT

myRT report for GCA_013522655.1_119A3

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Seq: JAAMRG010000002.1 Pseudomonas japonica strain 119A3 NODE_2_length_419692_cov_55.245211, whole genome shotgun sequence (419692 bp)
Overview 1 RT 1: 39911-46585 bp Neighborhood of RT #1 [39911, 46585] PRK05658 RimL RVT-GII Intron_maturas2 HNHc DUF4172 Feature: gene Location: 39911-41761 bp Feature: domain Description: PRK05658 Location: 39923-41759 bp Feature: domain Description: PRK05658 Location: 39923-41 759 bp Feature: gene Location: 41936-42655 bp Feature: domain Description: RimL Location: 42038-42554 bp Feature: domain Description: RimL Location: 42038-42554 bp Feature: gene Location: 43390-45240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43657-44476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43657-44476 bp Feature: domain Description: Intron_maturas2 Location: 44575-44878 bp Feature: domain Description: Intron_maturas2 Location: 44575-44878 bp Feature: domain Description: HNHc Note: nucleases Location: 45016-45166 bp Feature: domain Description: HNHc Note: nucleases Location: 4501 6-451 66 bp Feature: gene Location: 45536-45997 bp Feature: domain Description: DUF4172 Location: 45554-45797 bp Feature: domain Description: DUF41 72 Location: 45554-45797 bp Feature: gene Location: 46121-46585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), RimL (COG1670), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4172 (pfam13776)