myRT

myRT report for GCA_013522955.1_56A10

Download annotations/find similar RTs

Seq: JAAMQR010000001.1 Pseudomonas fulva strain 56A10 NODE_1_length_626986_cov_56.947301, whole genome shotgun sequence (626986 bp)
Overview 1 RT 1: 542631-548661 bp Neighborhood of RT #1 [542631, 548661] 2A0601 RVT-GII GIIM DUF2790 Feature: gene Location: 542631-545792 bp Feature: domain Description: 2A0601 Location: 542634-545778 bp Feature: domain Description: 2A0601 Location: 542634-545778 bp Feature: gene Location: 545947-546165 bp Feature: gene Location: 546266-547687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 546623-547238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 546623-547238 bp Feature: domain Description: GIIM Note: maturase Location: 547295-547520 bp Feature: domain Description: GIIM Note: maturase Location: 547295-547520 bp Feature: gene Location: 547871-548194 bp Feature: domain Description: DUF2790 Location: 547976-548180 bp Feature: domain Description: DUF2790 Location: 547976-5481 80 bp Feature: gene Location: 548401-548661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 2A0601 (TIGR00914), RVT-GII, GIIM (pfam08388), DUF2790 (pfam10976)

Seq: JAAMQR010000041.1 Pseudomonas fulva strain 56A10 NODE_41_length_22771_cov_60.144365, whole genome shotgun sequence (22771 bp)
Overview 1 RT 1: 8809-13703 bp Neighborhood of RT #1 [8809, 13735] PRK13348 PBP2_LTTR_like_1 RVT-Retrons MFS_MucK Feature: gene Location: 8809-9729 bp Feature: domain Description: PRK13348 Location: 8821-9031 bp Feature: domain Description: PRK13348 Location: 882 1-9031 bp Feature: domain Description: PBP2_LTTR_like_1 Location: 9094-9685 bp Feature: domain Description: PBP2 _LTTR_like_1 Location: 9094-9685 bp Feature: gene Location: 10276-10578 bp Feature: gene Location: 10581-11423 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10584-11151 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10584-11151 bp Feature: gene Location: 11841-11978 bp Feature: gene Location: 12416-13735 bp Feature: domain Description: MFS_MucK Location: 12512-13703 bp Feature: domain Description: MFS_MucK Location: 12 512 -13703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, MFS_MucK (cd17371), PRK13348 (HTH-type transcriptional regulator ArgP), PBP2_LTTR_like_1 (cd08421)

Seq: JAAMQR010000045.1 Pseudomonas fulva strain 56A10 NODE_45_length_16872_cov_58.253986, whole genome shotgun sequence (16872 bp)
Overview 1 RT 1: 2-4674 bp Neighborhood of RT #1 [2, 4817] MDR7 RVT-GII GIIM HTH_Tnp_1 HTH_Tnp_1 Tra5 Feature: gene Location: 2-1045 bp Feature: domain Description: MDR7 Location: 119-1040 bp Feature: domain Description: MDR7 Location: 119-1040 bp Feature: gene Location: 1316-1501 bp Feature: gene Location: 1702-3057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1993-2608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1993 -2608 bp Feature: domain Description: GIIM Note: maturase Location: 2665-2878 bp Feature: domain Description: GIIM Note: maturase Location: 2665-2878 bp Feature: gene Location: 3397-3918 bp Feature: domain Description: HTH_Tnp_1 Location: 3424-3580 bp Feature: domain Description: HTH_Tnp_1 Location: 3 424-3 580 bp Feature: domain Description: HTH_Tnp_1 Location: 3601-3826 bp Feature: domain Description: HTH_Tnp_1 Location: 3 601-3 826 bp Feature: gene Location: 3915-4817 bp Feature: domain Description: Tra5 Location: 4023-4674 bp Feature: domain Description: Tra5 Location: 4023 -4674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MDR7 (cd08276), Tra5 (COG2801)