myRT

myRT report for GCA_013523055.1_20A1

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Seq: JAAMQM010000015.1 Pseudomonas capeferrum strain 20A1 NODE_15_length_182464_cov_52.662568, whole genome shotgun sequence (182464 bp)
Overview 1 RT 1: 93557-96651 bp Neighborhood of RT #1 [93557, 96651] RVT-GII GIIM Feature: gene Location: 93557-94060 bp Feature: gene Location: 94161-94373 bp Feature: gene Location: 94550-95899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94832-95447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94832-95447 bp Feature: domain Description: GIIM Note: maturase Location: 95504-95717 bp Feature: domain Description: GIIM Note: maturase Location: 95504-9571 7 bp Feature: gene Location: 95908-96159 bp Feature: gene Location: 96313-96651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAMQM010000019.1 Pseudomonas capeferrum strain 20A1 NODE_19_length_130050_cov_46.235516, whole genome shotgun sequence (130050 bp)
Overview 1 RT 1: 88147-92785 bp Neighborhood of RT #1 [88147, 92913] HTH_XRE RVT-Retrons TIR_2 Feature: gene Location: 88147-88416 bp Feature: domain Description: HTH_XRE Location: 88180-88327 bp Feature: domain Description: HTH_XRE Location: 88180-8832 7 bp Feature: gene Location: 88500-88931 bp Feature: gene Location: 89204-90910 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 89354-89951 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 89354-89951 bp Feature: gene Location: 91442-92179 bp Feature: gene Location: 92416-92913 bp Feature: domain Description: TIR_2 Location: 92509-92785 bp Feature: domain Description: TIR_2 Location: 92 509-92 785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, TIR_2 (pfam13676)

Seq: JAAMQM010000003.1 Pseudomonas capeferrum strain 20A1 NODE_3_length_350410_cov_53.526035, whole genome shotgun sequence (350410 bp)
Overview 1 RT 1: 182046-187548 bp Neighborhood of RT #1 [182046, 187556] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66_C OprD Feature: gene Location: 182046-182450 bp Feature: domain Description: LZ_Tnp_IS66 Location: 182172-182436 bp Feature: domain Description: LZ_Tnp_IS66 Location: 182172-18243 6 bp Feature: gene Location: 182386-183375 bp Feature: domain Description: zf-IS66 Location: 182413-182539 bp Feature: domain Description: zf-IS66 Location: 182413 -18253 9 bp Feature: domain Description: DDE_Tnp_IS66 Location: 182581-183355 bp Feature: domain Description: DDE_Tnp_IS66 Location: 182581-183 3 55 bp Feature: gene Location: 183931-185604 bp Feature: RT Description: RVT_N Location: 183976-184219 bp Feature: RT Description: RVT_N Location: 183 976-184219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184264-184900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184264-184900 bp Feature: domain Description: GIIM Note: maturase Location: 184954-185185 bp Feature: domain Description: GIIM Note: maturase Location: 184954-185185 bp Feature: gene Location: 185739-185918 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 185790-185901 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 185790-185901 bp Feature: gene Location: 186297-187556 bp Feature: domain Description: OprD Location: 186381-187548 bp Feature: domain Description: OprD Location: 1863 81-187548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), OprD (pfam03573)

Seq: JAAMQM010000049.1 Pseudomonas capeferrum strain 20A1 NODE_49_length_1929_cov_109.557159, whole genome shotgun sequence (1929 bp)
Overview 1 RT 1: 74-1815 bp Neighborhood of RT #1 [74, 1815] RVT-GII GIIM Feature: gene Location: 74-1495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431-1046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 31-104 6 bp Feature: domain Description: GIIM Note: maturase Location: 1100-1328 bp Feature: domain Description: GIIM Note: maturase Location: 1100-1328 bp Feature: gene Location: 1645-1815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)