myRT

myRT report for GCA_013523175.1_ASM1352317v1

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Seq: VHJF01000001.1 Enterococcus faecium strain C1904 tig00000001_pilon, whole genome shotgun sequence (169066 bp)
Overview 1 RT 1: 100121-103309 bp Neighborhood of RT #1 [100121, 103311] Tra8 RVT-AbiP2 HsdM Feature: gene Location: 100121-100276 bp Feature: gene Location: 100615-100947 bp Feature: domain Description: Tra8 Location: 100636-100927 bp Feature: domain Description: Tra8 Location: 1 00636-1 00927 bp Feature: gene Location: 100925-101671 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 101273-101654 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 01 273-1 01 654 bp Feature: gene Location: 101913-102335 bp Feature: gene Location: 102727-103311 bp Feature: domain Description: HsdM Location: 102748-103309 bp Feature: domain Description: HsdM Location: 1 02748-1 03309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT-AbiP2, HsdM (COG0286)

Seq: VHJF01000002.1 Enterococcus faecium strain C1904 tig00000002_pilon, whole genome shotgun sequence (326715 bp)
Overview 1 RT 1: 204477-209478 bp Neighborhood of RT #1 [204477, 209486] Zeta_toxin FtsK RVT-GII HNHc FtsK_SpoIIIE RelB_DinJ Feature: gene Location: 204477-204947 bp Feature: domain Description: Zeta_toxin Location: 204480-204912 bp Feature: domain Description: Zeta_toxin Location: 2 04480-2 04912 bp Feature: gene Location: 205129-205482 bp Feature: domain Description: FtsK Location: 205141-205381 bp Feature: domain Description: FtsK Location: 2 05141-2 05381 bp Feature: gene Location: 205584-207458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205950-206646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 05950-2 06646 bp Feature: domain Description: HNHc Note: nucleases Location: 207186-207345 bp Feature: domain Description: HNHc Note: nucleases Location: 2 07186-2 07345 bp Feature: gene Location: 208052-209089 bp Feature: domain Description: FtsK_SpoIIIE Location: 208724-208970 bp Feature: domain Description: FtsK_SpoIIIE Location: 2 0872 4-2 08970 bp Feature: gene Location: 209151-209486 bp Feature: domain Description: RelB_DinJ Location: 209355-209478 bp Feature: domain Description: RelB_DinJ Location: 2 09355-2 09478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zeta_toxin (pfam06414), FtsK (COG1674), RVT-GII, HNHc (smart00507), FtsK_SpoIIIE (pfam01580), RelB_DinJ (TIGR02384)

Seq: VHJF01000009.1 Enterococcus faecium strain C1904 tig00000021_pilon, whole genome shotgun sequence (78406 bp)
Overview 1 RT 1: 23-1938 bp Neighborhood of RT #1 [23, 1970] RVT-GII Rep_trans Feature: gene Location: 23-649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 356-647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 56-647 bp Feature: gene Location: 1156-1305 bp Feature: gene Location: 1563-1970 bp Feature: domain Description: Rep_trans Location: 1566-1938 bp Feature: domain Description: Rep_trans Location: 1566-193 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Rep_trans (pfam02486)

Seq: VHJF01000034.1 Enterococcus faecium strain C1904 tig00000101_pilon, whole genome shotgun sequence (84946 bp)
Overview 1 RT 1: 13960-18782 bp Neighborhood of RT #1 [13960, 18796] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 13960-15165 bp Feature: domain Description: HTH_XRE Location: 14005-14149 bp Feature: domain Description: HTH_XRE Location: 14 005-14 14 9 bp Feature: domain Description: Rol_Rep_N Location: 14176-14443 bp Feature: domain Description: Rol_Rep_N Location: 14 176-14 4 4 3 bp Feature: domain Description: Rep_trans Location: 14467-15076 bp Feature: domain Description: Rep_trans Location: 14 4 67-15076 bp Feature: gene Location: 15949-16254 bp Feature: gene Location: 16613-17854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16619-17015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16619-17015 bp Feature: domain Description: HNHc Note: nucleases Location: 17570-17735 bp Feature: domain Description: HNHc Note: nucleases Location: 17570-17735 bp Feature: gene Location: 18015-18182 bp Feature: gene Location: 18299-18796 bp Feature: domain Description: ArdA Location: 18317-18782 bp Feature: domain Description: ArdA Location: 18317-18782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275)