myRT

myRT report for GCA_013601815.1_ASM1360181v1

Download annotations/find similar RTs

Seq: JABFIS010000015.1 Escherichia coli strain CE1796 NODE_15_length_120885_cov_55.314830, whole genome shotgun sequence (120885 bp)
Overview 1 RT 1: 51618-57376 bp 2 RT 2: 82783-87383 bp Neighborhood of RT #1 [51618, 57441] HsdM PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [82783, 87646] RVT-GII Inovirus_Gp2 DUF3987 Feature: gene Location: 51618-54041 bp Feature: domain Description: HsdM Location: 51639-53583 bp Feature: domain Description: HsdM Location: 51 639-53583 bp Feature: gene Location: 54300-54653 bp Feature: domain Description: PHA02517 Location: 54303-54648 bp Feature: domain Description: PHA0251 7 Location: 54303-54648 bp Feature: gene Location: 54848-56122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54872-55604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54872-55604 bp Feature: domain Description: GIIM Note: maturase Location: 55679-55877 bp Feature: domain Description: GIIM Note: maturase Location: 55679-55877 bp Feature: gene Location: 56324-56749 bp Feature: gene Location: 56962-57441 bp Feature: domain Description: PHA02517 Location: 57022-57376 bp Feature: domain Description: PHA0251 7 Location: 57022-57376 bp Feature: gene Location: 82783-82956 bp Feature: gene Location: 82990-83298 bp Feature: gene Location: 83285-84448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83399-84086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83399-84086 bp Feature: gene Location: 84774-85337 bp Feature: domain Description: Inovirus_Gp2 Location: 84831-85272 bp Feature: domain Description: Inovirus_Gp2 Location: 84831 -85272 bp Feature: gene Location: 86195-87646 bp Feature: domain Description: DUF3987 Location: 86306-87383 bp Feature: domain Description: DUF3987 Location: 86306-87383 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Inovirus_Gp2 (pfam11726), DUF3987 (pfam13148)

Seq: JABFIS010000031.1 Escherichia coli strain CE1796 NODE_31_length_28111_cov_53.399693, whole genome shotgun sequence (28111 bp)
Overview 1 RT 1: 21763-24260 bp Neighborhood of RT #1 [21763, 24260] Asparaginase_2 RVT-GII Feature: gene Location: 21763-22794 bp Feature: domain Description: Asparaginase_2 Location: 21853-22786 bp Feature: domain Description: Asparaginase_2 Location: 2 1853-2 2 786 bp Feature: gene Location: 23121-23270 bp Feature: gene Location: 23318-23764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23624-23726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 362 4-2 372 6 bp Feature: gene Location: 23795-23992 bp Feature: gene Location: 24096-24260 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII

Seq: JABFIS010000007.1 Escherichia coli strain CE1796 NODE_7_length_281921_cov_55.953254, whole genome shotgun sequence (281921 bp)
Overview 1 RT 1: 273620-276032 bp Neighborhood of RT #1 [273620, 276106] PHA02517 InsE RVT-GII RVT-GII group_II_RT_mat IS285 Feature: gene Location: 273620-274321 bp Feature: domain Description: PHA02517 Location: 273638-274316 bp Feature: domain Description: PHA02517 Location: 273 63 8-2743 16 bp Feature: gene Location: 274462-274764 bp Feature: domain Description: InsE Location: 274465-274750 bp Feature: domain Description: InsE Location: 274465-274750 bp Feature: gene Location: 274803-275006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274848-275004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274848-275004 bp Feature: gene Location: 275040-275276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275043-275223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275043 -275223 bp Feature: gene Location: 275269-275481 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 275272-275470 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 275272-275470 bp Feature: gene Location: 275624-276106 bp Feature: domain Description: IS285 Location: 275654-276032 bp Feature: domain Description: IS285 Location: 275654-27603 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328)