myRT

myRT report for GCA_013602555.1_ASM1360255v1

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Seq: JAANJH010000003.1 Klebsiella pneumoniae strain H17 N_3_length_343470, whole genome shotgun sequence (343470 bp)
Overview 1 RT 1: 113901-120769 bp Neighborhood of RT #1 [113901, 120771] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 113901-114629 bp Feature: domain Description: FimC Location: 113949-114612 bp Feature: domain Description: FimC Location: 1 1 3949-1 1 461 2 bp Feature: gene Location: 114661-117270 bp Feature: domain Description: FimD Location: 114718-117259 bp Feature: domain Description: FimD Location: 1 1 471 8-1 1 7259 bp Feature: gene Location: 117270-119348 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 117678-118122 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 1 7678-1 1 81 22 bp Feature: gene Location: 119405-119845 bp Feature: domain Description: Integrase_1 Location: 119411-119627 bp Feature: domain Description: Integrase_1 Location: 1 1 941 1 -1 1 9627 bp Feature: gene Location: 120106-120771 bp Feature: domain Description: INT_P4_C Location: 120211-120769 bp Feature: domain Description: INT_P4_C Location: 1 2021 1 -1 20769 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: JAANJH010000059.1 Klebsiella pneumoniae strain H17 N_59_length_2592, whole genome shotgun sequence (2592 bp)
Overview 1 RT 1: 2-2123 bp Neighborhood of RT #1 [2, 2368] RVT-GII GIIM Feature: gene Location: 2-214 bp Feature: gene Location: 845-2368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1118-1850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1118-1850 bp Feature: domain Description: GIIM Note: maturase Location: 1925-2123 bp Feature: domain Description: GIIM Note: maturase Location: 192 5-2 12 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAANJH010000063.1 Klebsiella pneumoniae strain H17 N_63_length_1892, whole genome shotgun sequence (1892 bp)
Overview 1 RT 1: 59-1891 bp Neighborhood of RT #1 [59, 1891] RVT-GII Feature: gene Location: 59-1546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1154 bp Feature: gene Location: 1700-1891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAANJH010000007.1 Klebsiella pneumoniae strain H17 N_7_length_239606, whole genome shotgun sequence (239606 bp)
Overview 1 RT 1: 47694-53249 bp Neighborhood of RT #1 [47694, 53249] Prim_Zn_Ribbon Toprim_3 RVT-UG4 PRK09776 PAS_9 PleD Feature: gene Location: 47694-48761 bp Feature: domain Description: Prim_Zn_Ribbon Location: 47805-47919 bp Feature: domain Description: Prim_Zn_Ribbon Location: 4 7805-4 7919 bp Feature: domain Description: Toprim_3 Location: 48441-48735 bp Feature: domain Description: Toprim_3 Location: 4 84 4 1-4 8735 bp Feature: gene Location: 48851-49558 bp Feature: gene Location: 49675-50427 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 50071-50326 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 50071-50326 bp Feature: gene Location: 51379-52650 bp Feature: domain Description: PRK09776 Location: 51487-51793 bp Feature: domain Description: PRK09776 Location: 514 87-51793 bp Feature: domain Description: PAS_9 Location: 51811-52117 bp Feature: domain Description: PAS_9 Location: 51811-52117 bp Feature: domain Description: PleD Location: 52117-52621 bp Feature: domain Description: PleD Location: 52117-52621 bp Feature: gene Location: 52824-53249 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prim_Zn_Ribbon (smart00778), Toprim_3 (pfam13362), RVT-UG4, PRK09776 (putative diguanylate cyclase; Provisional), PAS_9 (pfam13426), PleD (COG3706)