myRT

myRT report for GCA_013602615.1_ASM1360261v1

Download annotations/find similar RTs

Seq: JAANJG010000154.1 Klebsiella pneumoniae strain H1 N_154_length_671, whole genome shotgun sequence (671 bp)
Overview 1 RT 1: 2-669 bp Neighborhood of RT #1 [2, 669] RVT-UG11 Feature: gene Location: 2-439 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 275-440 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 275-440 bp Feature: gene Location: 544-669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11

Seq: JAANJG010000003.1 Klebsiella pneumoniae strain H1 N_3_length_355700, whole genome shotgun sequence (355700 bp)
Overview 1 RT 1: 234930-241783 bp Neighborhood of RT #1 [234930, 241800] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 234930-235595 bp Feature: domain Description: INT_P4_C Location: 235035-235593 bp Feature: domain Description: INT_P4_C Location: 2 35035-2 35593 bp Feature: gene Location: 235856-236296 bp Feature: domain Description: Integrase_1 Location: 235862-236078 bp Feature: domain Description: Integrase_1 Location: 2 35862 -2 36078 bp Feature: gene Location: 236353-238431 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 236761-237205 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2 36761-2 372 05 bp Feature: gene Location: 238431-241040 bp Feature: domain Description: FimD Location: 238488-241029 bp Feature: domain Description: FimD Location: 2 38488-2 4102 9 bp Feature: gene Location: 241072-241800 bp Feature: domain Description: FimC Location: 241120-241783 bp Feature: domain Description: FimC Location: 2 4112 0-2 41783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: JAANJG010000061.1 Klebsiella pneumoniae strain H1 N_61_length_2592, whole genome shotgun sequence (2592 bp)
Overview 1 RT 1: 225-2479 bp Neighborhood of RT #1 [225, 2479] RVT-GII GIIM Feature: gene Location: 225-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 498-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 498-123 0 bp Feature: domain Description: GIIM Note: maturase Location: 1305-1503 bp Feature: domain Description: GIIM Note: maturase Location: 13 05-1503 bp Feature: gene Location: 2042-2479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAANJG010000067.1 Klebsiella pneumoniae strain H1 N_67_length_1892, whole genome shotgun sequence (1892 bp)
Overview 1 RT 1: 347-1442 bp Neighborhood of RT #1 [347, 1834] RVT-GII Feature: gene Location: 347-1834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-14 4 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAANJG010000007.1 Klebsiella pneumoniae strain H1 N_7_length_239388, whole genome shotgun sequence (239388 bp)
Overview 1 RT 1: 186957-191887 bp Neighborhood of RT #1 [186957, 191913] PRK09776 PAS_9 PleD RVT-UG4 Prim_Zn_Ribbon Toprim_3 Feature: gene Location: 186957-188228 bp Feature: domain Description: PRK09776 Location: 187065-187371 bp Feature: domain Description: PRK09776 Location: 187065 -187371 bp Feature: domain Description: PAS_9 Location: 187389-187695 bp Feature: domain Description: PAS_9 Location: 187389-187695 bp Feature: domain Description: PleD Location: 187695-188199 bp Feature: domain Description: PleD Location: 187695 -188199 bp Feature: gene Location: 188583-189125 bp Feature: gene Location: 189180-189932 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 189576-189831 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1895 76-189831 bp Feature: gene Location: 190049-190756 bp Feature: gene Location: 190846-191913 bp Feature: domain Description: Prim_Zn_Ribbon Location: 190957-191071 bp Feature: domain Description: Prim_Zn_Ribbon Location: 19095 7-191071 bp Feature: domain Description: Toprim_3 Location: 191593-191887 bp Feature: domain Description: Toprim_3 Location: 1915 93-191887 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09776 (putative diguanylate cyclase; Provisional), PAS_9 (pfam13426), PleD (COG3706), RVT-UG4, Prim_Zn_Ribbon (smart00778), Toprim_3 (pfam13362)