myRT

myRT report for GCA_013602975.1_ASM1360297v1

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Seq: JAANJN010000021.1 Klebsiella pneumoniae strain G44 N_21_length_85947, whole genome shotgun sequence (85947 bp)
Overview 1 RT 1: 64735-69975 bp Neighborhood of RT #1 [64735, 70433] Trans_reg_C RVT-Retrons HTH_28 Feature: gene Location: 64735-65178 bp Feature: domain Description: Trans_reg_C Location: 64840-65071 bp Feature: domain Description: Trans_reg_C Location: 64840-65071 bp Feature: gene Location: 66234-66434 bp Feature: gene Location: 67381-69216 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 67516-68215 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6751 6-6821 5 bp Feature: gene Location: 69164-69322 bp Feature: gene Location: 69900-70433 bp Feature: domain Description: HTH_28 Location: 69927-69975 bp Feature: domain Description: HTH_28 Location: 69927-69975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Trans_reg_C (smart00862), RVT-Retrons, HTH_28 (pfam13518)

Seq: JAANJN010000027.1 Klebsiella pneumoniae strain G44 N_27_length_22190, whole genome shotgun sequence (22190 bp)
Overview 1 RT 1: 5403-10425 bp Neighborhood of RT #1 [5403, 10433] ArdC RVT-GII PRK10276 umuC Feature: gene Location: 5403-6368 bp Feature: domain Description: ArdC Location: 5529-6363 bp Feature: domain Description: ArdC Location: 552 9-6363 bp Feature: gene Location: 6500-6769 bp Feature: gene Location: 6838-8325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7243-7933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 43-7933 bp Feature: gene Location: 8479-9162 bp Feature: domain Description: PRK10276 Location: 8782-9145 bp Feature: domain Description: PRK102 76 Location: 8782 -9145 bp Feature: gene Location: 9162-10433 bp Feature: domain Description: umuC Location: 9165-10425 bp Feature: domain Description: umuC Location: 9165-1042 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: JAANJN010000006.1 Klebsiella pneumoniae strain G44 N_6_length_364549, whole genome shotgun sequence (364549 bp)
Overview 1 RT 1: 276367-283217 bp Neighborhood of RT #1 [276367, 283237] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 276367-277032 bp Feature: domain Description: INT_P4_C Location: 276472-277030 bp Feature: domain Description: INT_P4_C Location: 276472-27703 0 bp Feature: gene Location: 277293-277733 bp Feature: domain Description: Integrase_1 Location: 277299-277515 bp Feature: domain Description: Integrase_1 Location: 277299-277515 bp Feature: gene Location: 277790-279868 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 278198-278642 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 278198-278642 bp Feature: gene Location: 279868-282477 bp Feature: domain Description: FimD Location: 279925-282466 bp Feature: domain Description: FimD Location: 279925-282466 bp Feature: gene Location: 282509-283237 bp Feature: domain Description: FimC Location: 282557-283217 bp Feature: domain Description: FimC Location: 282557-283 217 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)