myRT

myRT report for GCA_013606165.1_ASM1360616v1

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Seq: JAANLQ010000010.1 Escherichia coli strain F38 N_10_length_180948, whole genome shotgun sequence (180948 bp)
Overview 1 RT 1: 78620-82561 bp Neighborhood of RT #1 [78620, 82561] RVT-Retrons Feature: gene Location: 78620-78859 bp Feature: gene Location: 79166-79342 bp Feature: gene Location: 79415-81187 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79574-80192 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79574-801 92 bp Feature: gene Location: 81209-81376 bp Feature: gene Location: 81422-82561 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: JAANLQ010000056.1 Escherichia coli strain F38 N_56_length_11463, whole genome shotgun sequence (11463 bp)
Overview 1 RT 1: 7144-11017 bp Neighborhood of RT #1 [7144, 11388] SLATT_5 RVT-UG17 Caudo_TAP Macro_Appr_pase Feature: gene Location: 7144-7320 bp Feature: gene Location: 7728-8432 bp Feature: domain Description: SLATT_5 Location: 7890-8400 bp Feature: domain Description: SLATT_5 Location: 7890-8400 bp Feature: gene Location: 8410-9780 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8638-9244 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8638-92 44 bp Feature: gene Location: 9893-10477 bp Feature: domain Description: Caudo_TAP Location: 10109-10466 bp Feature: domain Description: Caudo_TAP Location: 10109-10466 bp Feature: gene Location: 10486-11388 bp Feature: domain Description: Macro_Appr_pase Location: 10504-11017 bp Feature: domain Description: Macro_Appr_pase Location: 10504-11017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Macro_Appr_pase (cd02900)

Seq: JAANLQ010000063.1 Escherichia coli strain F38 N_63_length_5433, whole genome shotgun sequence (5433 bp)
Overview 1 RT 1: 1717-5430 bp Neighborhood of RT #1 [1717, 5430] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1717-1950 bp Feature: domain Description: DUF905 Location: 1747-1945 bp Feature: domain Description: DUF905 Location: 1747-1945 bp Feature: gene Location: 2018-2470 bp Feature: domain Description: PRK13732 Location: 2024-2468 bp Feature: domain Description: PRK13 73 2 Location: 2024-2468 bp Feature: gene Location: 2665-4566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2932-3763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293 2-3 763 bp Feature: domain Description: Intron_maturas2 Location: 3877-4135 bp Feature: domain Description: Intron_maturas2 Location: 3 877-413 5 bp Feature: domain Description: HNHc Note: nucleases Location: 4309-4471 bp Feature: domain Description: HNHc Note: nucleases Location: 43 09-4471 bp Feature: gene Location: 5254-5430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)