myRT

myRT report for GCA_013606735.1_ASM1360673v1

Download annotations/find similar RTs

Seq: JAANMA010000043.1 Escherichia coli strain C59 N_43_length_13073, whole genome shotgun sequence (13073 bp)
Overview 1 RT 1: 1686-5930 bp Neighborhood of RT #1 [1686, 5930] Macro_Appr_pase Caudo_TAP RVT-UG17 SLATT_5 Feature: gene Location: 1686-2588 bp Feature: domain Description: Macro_Appr_pase Location: 1704-2217 bp Feature: domain Description: Macro_Appr_pase Location: 1 704-221 7 bp Feature: gene Location: 2597-3181 bp Feature: domain Description: Caudo_TAP Location: 2813-3170 bp Feature: domain Description: Caudo_TAP Location: 281 3-31 70 bp Feature: gene Location: 3294-4664 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3522-4128 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 3522-41 28 bp Feature: gene Location: 4642-5346 bp Feature: domain Description: SLATT_5 Location: 4804-5314 bp Feature: domain Description: SLATT_5 Location: 4804-531 4 bp Feature: gene Location: 5754-5930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Macro_Appr_pase (cd02900), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160)

Seq: JAANMA010000045.1 Escherichia coli strain C59 N_45_length_11504, whole genome shotgun sequence (11504 bp)
Overview 1 RT 1: 1-1027 bp Neighborhood of RT #1 [1, 1035] RVT-GII PRK10173 PRK10173 Feature: gene Location: 1-252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22-94 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 -94 bp Feature: gene Location: 291-602 bp Feature: domain Description: PRK10173 Location: 294-513 bp Feature: domain Description: PRK10173 Location: 2 94-513 bp Feature: gene Location: 586-1035 bp Feature: domain Description: PRK10173 Location: 589-1027 bp Feature: domain Description: PRK10173 Location: 589-102 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)

Seq: JAANMA010000064.1 Escherichia coli strain C59 N_64_length_3767, whole genome shotgun sequence (3767 bp)
Overview 1 RT 1: 1590-3519 bp Neighborhood of RT #1 [1590, 3764] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 1590-1994 bp Feature: domain Description: InsE Location: 1620-1956 bp Feature: domain Description: InsE Location: 1620-1956 bp Feature: gene Location: 2023-2379 bp Feature: domain Description: PHA02517 Location: 2026-2335 bp Feature: domain Description: PHA02517 Location: 2026-23 3 5 bp Feature: gene Location: 2496-3764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2514-3246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2514-3 246 bp Feature: domain Description: GIIM Note: maturase Location: 3321-3519 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 21-3 519 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JAANMA010000078.1 Escherichia coli strain C59 N_78_length_1144, whole genome shotgun sequence (1144 bp)
Overview 1 RT 1: 3-1143 bp Neighborhood of RT #1 [3, 1142] PHA02517 RVT-GII Feature: gene Location: 3-224 bp Feature: domain Description: PHA02517 Location: 6-159 bp Feature: domain Description: PHA02517 Location: 6-159 bp Feature: gene Location: 816-1142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1089-1143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1089-114 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: JAANMA010000009.1 Escherichia coli strain C59 N_9_length_183328, whole genome shotgun sequence (183328 bp)
Overview 1 RT 1: 98388-102329 bp Neighborhood of RT #1 [98388, 102329] RVT-Retrons Feature: gene Location: 98388-99527 bp Feature: gene Location: 99573-99740 bp Feature: gene Location: 99762-101534 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 99921-100539 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 99921-1005 39 bp Feature: gene Location: 101755-101898 bp Feature: gene Location: 102090-102329 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons