myRT

myRT report for GCA_013606935.1_ASM1360693v1

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Seq: JAANMD010000016.1 Escherichia coli strain C41 N_16_length_117754, whole genome shotgun sequence (117754 bp)
Overview 1 RT 1: 52042-55924 bp Neighborhood of RT #1 [52042, 55929] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 52042-52500 bp Feature: domain Description: dut Location: 52048-52495 bp Feature: domain Description: dut Location: 52048-52495 bp Feature: gene Location: 52607-53203 bp Feature: domain Description: slmA Location: 52613-53189 bp Feature: domain Description: slmA Location: 5261 3-531 89 bp Feature: gene Location: 53249-54208 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53384-53933 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53384-53933 bp Feature: gene Location: 54506-55162 bp Feature: domain Description: pyrE Location: 54524-55157 bp Feature: domain Description: pyrE Location: 54524-551 57 bp Feature: gene Location: 55213-55929 bp Feature: domain Description: rph Location: 55216-55924 bp Feature: domain Description: rph Location: 5521 6-55924 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: JAANMD010000053.1 Escherichia coli strain C41 N_53_length_16514, whole genome shotgun sequence (16514 bp)
Overview 1 RT 1: 9855-13837 bp Neighborhood of RT #1 [9855, 13863] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 9855-10886 bp Feature: domain Description: Asparaginase_2 Location: 9945-10878 bp Feature: domain Description: Asparaginase_2 Location: 9945-10878 bp Feature: gene Location: 11213-11362 bp Feature: gene Location: 11410-11856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11716-11818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11716-11818 bp Feature: gene Location: 12078-12449 bp Feature: gene Location: 12502-13863 bp Feature: domain Description: DcuC Location: 12505-13837 bp Feature: domain Description: DcuC Location: 12 505-13837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DcuC (TIGR00771), Asparaginase_2 (pfam01112)

Seq: JAANMD010000058.1 Escherichia coli strain C41 N_58_length_15194, whole genome shotgun sequence (15194 bp)
Overview 1 RT 1: 11989-15194 bp Neighborhood of RT #1 [11989, 15193] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 11989-12288 bp Feature: domain Description: InsE Location: 12019-12283 bp Feature: domain Description: InsE Location: 12019-12283 bp Feature: gene Location: 12285-12752 bp Feature: domain Description: PHA02517 Location: 12351-12690 bp Feature: domain Description: PHA02517 Location: 123 51-12690 bp Feature: gene Location: 13344-14585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13617-14349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 617-143 49 bp Feature: domain Description: GIIM Note: maturase Location: 14424-14580 bp Feature: domain Description: GIIM Note: maturase Location: 14424-14580 bp Feature: gene Location: 14637-14867 bp Feature: gene Location: 14978-15193 bp Feature: domain Description: PHA02517 Location: 14981-15194 bp Feature: domain Description: PHA02517 Location: 14981-15194 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JAANMD010000082.1 Escherichia coli strain C41 N_82_length_5419, whole genome shotgun sequence (5419 bp)
Overview 1 RT 1: 2407-4868 bp Neighborhood of RT #1 [2407, 4966] RVT-GII GIIM RAYT Feature: gene Location: 2407-2544 bp Feature: gene Location: 2634-2903 bp Feature: gene Location: 2928-4274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3216-3834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3216-3834 bp Feature: domain Description: GIIM Note: maturase Location: 3882-4113 bp Feature: domain Description: GIIM Note: maturase Location: 3882-4 113 bp Feature: gene Location: 4427-4966 bp Feature: domain Description: RAYT Location: 4505-4868 bp Feature: domain Description: RAYT Location: 4 505-4 868 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RAYT (COG1943)