myRT

myRT report for GCA_013607395.1_ASM1360739v1

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Seq: JAANML010000011.1 Escherichia coli strain A43 N_11_length_124109, whole genome shotgun sequence (124109 bp)
Overview 1 RT 1: 119418-124038 bp Neighborhood of RT #1 [119418, 124049] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP Feature: gene Location: 119418-121004 bp Feature: domain Description: prfC Location: 119436-121002 bp Feature: domain Description: prfC Location: 1 1 9436-1 21 002 bp Feature: gene Location: 121224-121484 bp Feature: domain Description: PRK10597 Location: 121227-121467 bp Feature: domain Description: PRK1 0597 Location: 1 21 227-1 21 467 bp Feature: gene Location: 121842-123446 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 122133-122724 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 221 33-1 22724 bp Feature: domain Description: TIR_2 Location: 123051-123384 bp Feature: domain Description: TIR_2 Location: 1 23051 -1 23384 bp Feature: gene Location: 123891-124049 bp Feature: domain Description: Caudo_TAP Location: 123906-124038 bp Feature: domain Description: Caudo_TAP Location: 1 23906-1 24038 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), Caudo_TAP (pfam02413)

Seq: JAANML010000060.1 Escherichia coli strain A43 N_60_length_19829, whole genome shotgun sequence (19829 bp)
Overview 1 RT 1: 9960-13849 bp Neighborhood of RT #1 [9960, 13854] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 9960-10274 bp Feature: gene Location: 10672-10869 bp Feature: gene Location: 11038-11472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11230-11446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112 30-11446 bp Feature: gene Location: 11445-12098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11448-11856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11448-11856 bp Feature: domain Description: GIIM Note: maturase Location: 11904-12096 bp Feature: domain Description: GIIM Note: maturase Location: 11904-12 096 bp Feature: gene Location: 12474-12692 bp Feature: gene Location: 12823-13854 bp Feature: domain Description: LacI Location: 12865-13000 bp Feature: domain Description: LacI Location: 12 865-13000 bp Feature: domain Description: PBP1_GntR Location: 13039-13849 bp Feature: domain Description: PBP1_GntR Location: 13039-13849 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)

Seq: JAANML010000098.1 Escherichia coli strain A43 N_98_length_2313, whole genome shotgun sequence (2313 bp)
Overview 1 RT 1: 2-1963 bp Neighborhood of RT #1 [2, 2208] RVT-GII GIIM Feature: gene Location: 2-391 bp Feature: gene Location: 685-2208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 958-1690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 958-1690 bp Feature: domain Description: GIIM Note: maturase Location: 1765-1963 bp Feature: domain Description: GIIM Note: maturase Location: 1765-1963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)