myRT

myRT report for GCA_013625365.1_ASM1362536v1

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Seq: WJHY01000113.1 Klebsiella pneumoniae strain KP2013z28 plasmid pIncFII KP2013z28_contig_113, whole genome shotgun sequence (8941 bp)
Overview 1 RT 1: 886-3957 bp Neighborhood of RT #1 [886, 3971] DDE_Tnp_ISL3 RVT-GII zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 AfaD-like Feature: gene Location: 886-1020 bp Feature: gene Location: 1155-1517 bp Feature: gene Location: 1707-2387 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1713-1869 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1 71 3-1 869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2247-2385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2247-2385 bp Feature: gene Location: 2427-3404 bp Feature: domain Description: zf-ISL3 Location: 2559-2685 bp Feature: domain Description: zf-ISL3 Location: 2559-2685 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 2703-2850 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 2703-2850 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 2901-3375 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 2901 -3375 bp Feature: gene Location: 3522-3971 bp Feature: domain Description: AfaD-like Location: 3618-3957 bp Feature: domain Description: AfaD-like Location: 361 8-3957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_ISL3 (pfam01610), RVT-GII, zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), AfaD-like (cd18776)

Seq: WJHY01000071.1 Klebsiella pneumoniae strain KP2013z28 KP2013z28_contig_71, whole genome shotgun sequence (1914 bp)
Overview 1 RT 1: 3-1464 bp Neighborhood of RT #1 [3, 1856] RVT-GII Feature: gene Location: 3-215 bp Feature: gene Location: 369-1856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 774-1464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 774-1464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WJHY01000072.1 Klebsiella pneumoniae strain KP2013z28 KP2013z28_contig_72, whole genome shotgun sequence (85956 bp)
Overview 1 RT 1: 80311-84532 bp Neighborhood of RT #1 [80311, 85710] FimC FimD RVT-UG4 Feature: gene Location: 80311-81039 bp Feature: domain Description: FimC Location: 80359-81022 bp Feature: domain Description: FimC Location: 803 59-81022 bp Feature: gene Location: 81071-83680 bp Feature: domain Description: FimD Location: 81128-83669 bp Feature: domain Description: FimD Location: 81128-83 669 bp Feature: gene Location: 83680-85710 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 84088-84532 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 84088-8453 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4