myRT

myRT report for GCA_013694125.1_ASM1369412v1

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Seq: JACEFX010000029.1 Escherichia coli strain E36 NODE_29_length_49799_cov_29.9729, whole genome shotgun sequence (49799 bp)
Overview 1 RT 1: 27937-31287 bp Neighborhood of RT #1 [27937, 31319] PinE RVT-GII GIIM RVT-GII PRK09413 Feature: gene Location: 27937-28584 bp Feature: domain Description: PinE Location: 28030-28579 bp Feature: domain Description: PinE Location: 28030-28579 bp Feature: gene Location: 28684-29085 bp Feature: gene Location: 29294-30169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29300-29756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29300-29756 bp Feature: domain Description: GIIM Note: maturase Location: 29804-30035 bp Feature: domain Description: GIIM Note: maturase Location: 29804-30035 bp Feature: gene Location: 30233-30646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30554-30641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30554-30641 bp Feature: gene Location: 30717-31067 bp Feature: gene Location: 31122-31319 bp Feature: domain Description: PRK09413 Location: 31125-31287 bp Feature: domain Description: PRK0941 3 Location: 31 1 25-31 287 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, GIIM (pfam08388), PRK09413 (IS2 repressor TnpA; Reviewed)

Seq: JACEFX010000042.1 Escherichia coli strain E36 NODE_42_length_20928_cov_15.6826, whole genome shotgun sequence (20928 bp)
Overview 1 RT 1: 4755-8394 bp Neighborhood of RT #1 [4755, 8561] InsE PHA02517 RVT-GII GIIM COG2085 Feature: gene Location: 4755-5057 bp Feature: domain Description: InsE Location: 4794-5043 bp Feature: domain Description: InsE Location: 4794-5043 bp Feature: gene Location: 5113-5538 bp Feature: domain Description: PHA02517 Location: 5137-5473 bp Feature: domain Description: PHA02 517 Location: 5137-5473 bp Feature: gene Location: 6130-7653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6403-7135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6403-7135 bp Feature: domain Description: GIIM Note: maturase Location: 7210-7408 bp Feature: domain Description: GIIM Note: maturase Location: 72 10-7408 bp Feature: gene Location: 7848-7982 bp Feature: gene Location: 8148-8561 bp Feature: domain Description: COG2085 Location: 8247-8394 bp Feature: domain Description: COG2 085 Location: 82 47-8394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG2085 (Predicted dinucleotide-binding enzyme )

Seq: JACEFX010000008.1 Escherichia coli strain E36 NODE_8_length_207194_cov_15.5663, whole genome shotgun sequence (207194 bp)
Overview 1 RT 1: 137571-143602 bp Neighborhood of RT #1 [137571, 143602] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 137571-138491 bp Feature: domain Description: AbiEii Location: 137613-138354 bp Feature: domain Description: AbiEii Location: 13 7613 -13 83 54 bp Feature: gene Location: 138478-139281 bp Feature: domain Description: AbiEi_3_N Location: 138511-138772 bp Feature: domain Description: AbiEi_3 _N Location: 13 8511-13 8772 bp Feature: domain Description: AbiEi_3 Location: 138784-139240 bp Feature: domain Description: AbiEi_3 Location: 13 8784-13 9240 bp Feature: gene Location: 139576-142785 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 140104-140593 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 140104-140593 bp Feature: domain Description: nitrilase Location: 142099-142696 bp Feature: domain Description: nitrilase Location: 142099-142696 bp Feature: gene Location: 142946-143086 bp Feature: domain Description: Phage_ASH Location: 142973-143066 bp Feature: domain Description: Phage_ASH Location: 142973 -143 066 bp Feature: gene Location: 143132-143602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)