myRT

myRT report for GCA_013760885.1_ASM1376088v1

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Seq: JACDUC010000001.1 Pseudomonas oleovorans strain B9D3B Ga0416737_01, whole genome shotgun sequence (4778465 bp)
Overview 1 RT 1: 1026992-1035512 bp 2 RT 2: 1067223-1073076 bp 3 RT 3: 1463209-1467233 bp 4 RT 4: 2017809-2020341 bp 5 RT 5: 2087570-2093416 bp 6 RT 6: 2118053-2122916 bp 7 RT 7: 2703892-2710399 bp 8 RT 8: 2759205-2764187 bp 9 RT 9: 3426421-3433531 bp 10 RT 10: 3813735-3824391 bp 11 RT 11: 4135322-4138586 bp 12 RT 12: 4745480-4751342 bp 13 RT 13: 4758172-4763205 bp Neighborhood of RT #1 [1026992, 1035517] PRK11642 Tar RVT-GII GIIM PRK01117 Neighborhood of RT #2 [1067223, 1073076] LysR PRK05749 RVT-GII GIIM type_I_sec_TolC Neighborhood of RT #3 [1463209, 1467233] XerC PRK10748 RVT-GII GIIM Neighborhood of RT #4 [2017809, 2020341] rpmG RVT-GII GIIM Neighborhood of RT #5 [2087570, 2093424] OLE1 DDE_Tnp_ISL3 RVT-GII GIIM PAS_3 GGDEF OprD Neighborhood of RT #6 [2118053, 2122927] MFS_OFA_like RVT-GII GIIM hisB hisH Neighborhood of RT #7 [2703892, 2710440] PRK10510 RVT-GII GIIM CHASE sensory_box PAS_4 TMAO_torS TMAO_torS TMAO_torS Neighborhood of RT #8 [2759205, 2764192] polynuc_phos RVT-GII GIIM OsmY yjbJ Neighborhood of RT #9 [3426421, 3433539] PRK05657 RVT-GII GIIM PreA DUF3470 mutS1 Neighborhood of RT #10 [3813735, 3824420] Arm-DNA-bind_3 INT_P4_C RVT-GII GIIM recC recB Neighborhood of RT #11 [4135322, 4138586] IstB_IS21_ATP IstB_IS21 RVT-GII GIIM Neighborhood of RT #12 [4745480, 4751467] PRK09984 Arc RVT-GII GIIM IstB_IS21_ATP IstB_IS21 COG4584 COG4584 Neighborhood of RT #13 [4758172, 4763222] MgtE DUF4124 SmpA_OmlA RVT-GII GIIM PRK01712 Feature: gene Location: 1026992-1029514 bp Feature: domain Description: PRK11642 Location: 1027010-1029428 bp Feature: domain Description: PRK1 1 642 Location: 1 02701 0-1 029428 bp Feature: gene Location: 1030204-1032147 bp Feature: domain Description: Tar Location: 1031002-1032145 bp Feature: domain Description: Tar Location: 1 031 002-1 0321 45 bp Feature: gene Location: 1032319-1033644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1032580-1033195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 032580-1 0331 95 bp Feature: domain Description: GIIM Note: maturase Location: 1033249-1033477 bp Feature: domain Description: GIIM Note: maturase Location: 1 033249-1 033477 bp Feature: gene Location: 1033580-1034059 bp Feature: gene Location: 1034222-1035517 bp Feature: domain Description: PRK01117 Location: 1034231-1035512 bp Feature: domain Description: PRK01 1 1 7 Location: 1 034231 -1 03551 2 bp Feature: gene Location: 1067223-1068110 bp Feature: domain Description: LysR Location: 1067235-1068099 bp Feature: domain Description: LysR Location: 1 067235-1 068099 bp Feature: gene Location: 1068313-1069578 bp Feature: domain Description: PRK05749 Location: 1068316-1069573 bp Feature: domain Description: PRK05749 Location: 1 06831 6-1 069573 bp Feature: gene Location: 1069791-1070642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1069887-1070193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 069887-1 0701 93 bp Feature: domain Description: GIIM Note: maturase Location: 1070247-1070475 bp Feature: domain Description: GIIM Note: maturase Location: 1 070247-1 070475 bp Feature: gene Location: 1071265-1072707 bp Feature: domain Description: type_I_sec_TolC Location: 1071352-1072618 bp Feature: domain Description: type_I_sec_TolC Location: 1 071 352-1 07261 8 bp Feature: gene Location: 1072882-1073076 bp Feature: gene Location: 1463209-1464111 bp Feature: domain Description: XerC Location: 1463218-1464097 bp Feature: domain Description: XerC Location: 1 46321 8-1 464097 bp Feature: gene Location: 1464108-1464809 bp Feature: domain Description: PRK10748 Location: 1464117-1464792 bp Feature: domain Description: PRK1 0748 Location: 1 4641 1 7-1 464792 bp Feature: gene Location: 1465012-1466337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1465273-1465888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 465273-1 465888 bp Feature: domain Description: GIIM Note: maturase Location: 1465942-1466170 bp Feature: domain Description: GIIM Note: maturase Location: 1 465942-1 4661 70 bp Feature: gene Location: 1466273-1466752 bp Feature: gene Location: 1466910-1467233 bp Feature: gene Location: 2017809-2017964 bp Feature: domain Description: rpmG Location: 2017812-2017956 bp Feature: domain Description: rpmG Location: 201 781 2-201 7956 bp Feature: gene Location: 2018127-2018606 bp Feature: gene Location: 2018542-2019867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2018803-2019418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 8803-201 941 8 bp Feature: domain Description: GIIM Note: maturase Location: 2019472-2019700 bp Feature: domain Description: GIIM Note: maturase Location: 201 9472-201 9700 bp Feature: gene Location: 2019874-2020002 bp Feature: gene Location: 2020117-2020341 bp Feature: gene Location: 2087570-2088760 bp Feature: domain Description: OLE1 Location: 2087597-2088335 bp Feature: domain Description: OLE1 Location: 2087597-2088335 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 2088383-2088731 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 2088383-2088731 bp Feature: gene Location: 2088811-2089101 bp Feature: gene Location: 2089193-2090560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2089523-2090141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2089523-20901 41 bp Feature: domain Description: GIIM Note: maturase Location: 2090198-2090408 bp Feature: domain Description: GIIM Note: maturase Location: 20901 98-2090408 bp Feature: gene Location: 2090697-2091680 bp Feature: domain Description: PAS_3 Location: 2090880-2091099 bp Feature: domain Description: PAS_3 Location: 2090880-2091 099 bp Feature: domain Description: GGDEF Location: 2091150-2091672 bp Feature: domain Description: GGDEF Location: 2091 1 50-2091 672 bp Feature: gene Location: 2092105-2093424 bp Feature: domain Description: OprD Location: 2092174-2093416 bp Feature: domain Description: OprD Location: 20921 74-209341 6 bp Feature: gene Location: 2118053-2119711 bp Feature: domain Description: MFS_OFA_like Location: 2118140-2119496 bp Feature: domain Description: MFS_OFA_like Location: 21 1 81 40-21 1 9496 bp Feature: gene Location: 2119557-2120057 bp Feature: gene Location: 2120149-2121516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2120479-2121097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 20479-21 21 097 bp Feature: domain Description: GIIM Note: maturase Location: 2121154-2121364 bp Feature: domain Description: GIIM Note: maturase Location: 21 21 1 54-21 21 364 bp Feature: gene Location: 2121683-2122288 bp Feature: domain Description: hisB Location: 2121704-2122286 bp Feature: domain Description: hisB Location: 21 21 704-21 22286 bp Feature: gene Location: 2122289-2122927 bp Feature: domain Description: hisH Location: 2122292-2122916 bp Feature: domain Description: hisH Location: 21 22292-21 2291 6 bp Feature: gene Location: 2703892-2704548 bp Feature: domain Description: PRK10510 Location: 2703895-2704546 bp Feature: domain Description: PRK1 051 0 Location: 2703895-2704546 bp Feature: gene Location: 2704707-2705186 bp Feature: gene Location: 2705122-2705988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2705383-2705974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2705383-2705974 bp Feature: gene Location: 2706046-2706453 bp Feature: domain Description: GIIM Note: maturase Location: 2706058-2706286 bp Feature: domain Description: GIIM Note: maturase Location: 2706058-2706286 bp Feature: gene Location: 2706652-2710440 bp Feature: domain Description: CHASE Location: 2706973-2707528 bp Feature: domain Description: CHASE Location: 2706973-2707528 bp Feature: domain Description: sensory_box Location: 2707789-2708122 bp Feature: domain Description: sensory_box Location: 2707789-27081 22 bp Feature: domain Description: PAS_4 Location: 2708137-2708470 bp Feature: domain Description: PAS_4 Location: 27081 37-2708470 bp Feature: domain Description: TMAO_torS Location: 2708479-2709520 bp Feature: domain Description: TMAO_torS Location: 2708479-2709520 bp Feature: domain Description: TMAO_torS Location: 2709619-2709856 bp Feature: domain Description: TMAO_torS Location: 270961 9-2709856 bp Feature: domain Description: TMAO_torS Location: 2710018-2710399 bp Feature: domain Description: TMAO_torS Location: 271 001 8-271 0399 bp Feature: gene Location: 2759205-2761310 bp Feature: domain Description: polynuc_phos Location: 2759232-2761281 bp Feature: domain Description: polynuc_phos Location: 2759232-2761 281 bp Feature: gene Location: 2761474-2761953 bp Feature: gene Location: 2761889-2763214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2762150-2762765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27621 50-2762765 bp Feature: domain Description: GIIM Note: maturase Location: 2762819-2763047 bp Feature: domain Description: GIIM Note: maturase Location: 276281 9-2763047 bp Feature: gene Location: 2763583-2763936 bp Feature: domain Description: OsmY Location: 2763628-2763916 bp Feature: domain Description: OsmY Location: 2763628-276391 6 bp Feature: gene Location: 2763989-2764192 bp Feature: domain Description: yjbJ Location: 2763992-2764187 bp Feature: domain Description: yjbJ Location: 2763992-27641 87 bp Feature: gene Location: 3426421-3427428 bp Feature: domain Description: PRK05657 Location: 3426541-3427423 bp Feature: domain Description: PRK05657 Location: 3426541 -3427423 bp Feature: gene Location: 3427585-3428064 bp Feature: gene Location: 3428000-3429325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3428261-3428876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3428261 -3428876 bp Feature: domain Description: GIIM Note: maturase Location: 3428930-3429158 bp Feature: domain Description: GIIM Note: maturase Location: 3428930-34291 58 bp Feature: gene Location: 3430509-3430832 bp Feature: domain Description: PreA Location: 3430521-3430701 bp Feature: domain Description: PreA Location: 3430521 -3430701 bp Feature: domain Description: DUF3470 Location: 3430707-3430830 bp Feature: domain Description: DUF3470 Location: 3430707-3430830 bp Feature: gene Location: 3430972-3433539 bp Feature: domain Description: mutS1 Location: 3430993-3433531 bp Feature: domain Description: mutS1 Location: 3430993-3433531 bp Feature: gene Location: 3813735-3815087 bp Feature: domain Description: Arm-DNA-bind_3 Location: 3813750-3814026 bp Feature: domain Description: Arm-DNA-bind_3 Location: 381 3750-381 4026 bp Feature: domain Description: INT_P4_C Location: 3814467-3815058 bp Feature: domain Description: INT_P4_C Location: 381 4467-381 5058 bp Feature: gene Location: 3815489-3815968 bp Feature: gene Location: 3815904-3817181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3816165-3816762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381 61 65-381 6762 bp Feature: domain Description: GIIM Note: maturase Location: 3816819-3817029 bp Feature: domain Description: GIIM Note: maturase Location: 381 681 9-381 7029 bp Feature: gene Location: 3817381-3820794 bp Feature: domain Description: recC Location: 3817417-3820648 bp Feature: domain Description: recC Location: 381 741 7-3820648 bp Feature: gene Location: 3820791-3824420 bp Feature: domain Description: recB Location: 3820818-3824391 bp Feature: domain Description: recB Location: 382081 8-3824391 bp Feature: gene Location: 4135322-4136071 bp Feature: domain Description: IstB_IS21_ATP Location: 4135394-4135472 bp Feature: domain Description: IstB_IS21 _ATP Location: 41 35394-41 35472 bp Feature: domain Description: IstB_IS21 Location: 4135484-4136012 bp Feature: domain Description: IstB_IS21 Location: 41 35484-41 3601 2 bp Feature: gene Location: 4136626-4137105 bp Feature: gene Location: 4137041-4138045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4137302-4137917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 37302-41 3791 7 bp Feature: gene Location: 4138021-4138365 bp Feature: domain Description: GIIM Note: maturase Location: 4138027-4138198 bp Feature: domain Description: GIIM Note: maturase Location: 41 38027-41 381 98 bp Feature: gene Location: 4138458-4138586 bp Feature: gene Location: 4745480-4746304 bp Feature: domain Description: PRK09984 Location: 4745483-4746218 bp Feature: domain Description: PRK09984 Location: 4745483-474621 8 bp Feature: gene Location: 4746697-4747014 bp Feature: domain Description: Arc Location: 4746721-4746868 bp Feature: domain Description: Arc Location: 4746721 -4746868 bp Feature: gene Location: 4747092-4748417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4747353-4747968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4747353-4747968 bp Feature: domain Description: GIIM Note: maturase Location: 4748022-4748250 bp Feature: domain Description: GIIM Note: maturase Location: 4748022-4748250 bp Feature: gene Location: 4749165-4749920 bp Feature: domain Description: IstB_IS21_ATP Location: 4749237-4749321 bp Feature: domain Description: IstB_IS21 _ATP Location: 4749237-4749321 bp Feature: domain Description: IstB_IS21 Location: 4749324-4749852 bp Feature: domain Description: IstB_IS21 Location: 4749324-4749852 bp Feature: gene Location: 4749938-4751467 bp Feature: domain Description: COG4584 Location: 4750031-4750841 bp Feature: domain Description: COG4584 Location: 4750031 -4750841 bp Feature: domain Description: COG4584 Location: 4750874-4751342 bp Feature: domain Description: COG4584 Location: 4750874-4751 342 bp Feature: gene Location: 4758172-4759614 bp Feature: domain Description: MgtE Location: 4758295-4759609 bp Feature: domain Description: MgtE Location: 4758295-4759609 bp Feature: gene Location: 4759938-4760432 bp Feature: domain Description: DUF4124 Location: 4759995-4760091 bp Feature: domain Description: DUF41 24 Location: 4759995-4760091 bp Feature: domain Description: SmpA_OmlA Location: 4760268-4760427 bp Feature: domain Description: SmpA_OmlA Location: 4760268-4760427 bp Feature: gene Location: 4760526-4761878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4760841-4761459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4760841 -4761 459 bp Feature: domain Description: GIIM Note: maturase Location: 4761516-4761726 bp Feature: domain Description: GIIM Note: maturase Location: 4761 51 6-4761 726 bp Feature: gene Location: 4761970-4762212 bp Feature: gene Location: 4763037-4763222 bp Feature: domain Description: PRK01712 Location: 4763040-4763205 bp Feature: domain Description: PRK01 71 2 Location: 4763040-4763205 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11642 (ribonuclease R), Tar (COG0840), RVT-GII, GIIM (pfam08388), PRK01117 (adenylosuccinate synthetase; Provisional), LysR (COG0583), PRK05749 (3-deoxy-D-manno-octulosonic-acid transferase; Reviewed), type_I_sec_TolC (TIGR01844), XerC (COG4973), PRK10748 (5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB)
rpmG (PRK00595), OLE1 (COG1398), DDE_Tnp_ISL3 (pfam01610), PAS_3 (pfam08447), GGDEF (TIGR00254), OprD (pfam03573), MFS_OFA_like (cd17353), hisB (PRK13598), hisH (PRK14004), PRK10510 (OmpA family lipoprotein)
CHASE (smart01079), sensory_box (TIGR00229), PAS_4 (pfam08448), TMAO_torS (TIGR02956), polynuc_phos (TIGR03591), OsmY (COG2823), yjbJ (COG3237), PRK05657 (RNA polymerase sigma factor RpoS; Validated), PreA (COG1146), DUF3470 (pfam11953)
mutS1 (TIGR01070), Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), recC (TIGR01450), recB (TIGR00609), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), PRK09984 (phosphonate ABC transporter ATP-binding protein), Arc (pfam03869), COG4584 (Transposase )
MgtE (pfam01769), DUF4124 (pfam13511), SmpA_OmlA (pfam04355), PRK01712 (carbon storage regulator CsrA)