myRT

myRT report for GCA_013760905.1_ASM1376090v1

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Seq: JACDUD010000001.1 Pseudomonas oleovorans strain B9D3C Ga0416738_01, whole genome shotgun sequence (2987251 bp)
Overview 1 RT 1: 505160-510118 bp 2 RT 2: 558912-566259 bp 3 RT 3: 1146425-1151084 bp 4 RT 4: 1175928-1181813 bp 5 RT 5: 1249011-1251535 bp 6 RT 6: 1802119-1806129 bp 7 RT 7: 2196276-2202118 bp 8 RT 8: 2233835-2242274 bp Neighborhood of RT #1 [505160, 510147] yjbJ OsmY RVT-GII GIIM polynuc_phos Neighborhood of RT #2 [558912, 566273] CHASE sensory_box PAS_4 TMAO_torS TMAO_torS TMAO_torS GIIM RVT-GII PRK10510 PRK10510 Neighborhood of RT #3 [1146425, 1151299] hisH hisB RVT-GII GIIM MFS_OFA_like Neighborhood of RT #4 [1175928, 1181842] OprD PAS_3 GGDEF RVT-GII GIIM OLE1 DDE_Tnp_ISL3 Neighborhood of RT #5 [1249011, 1251543] RVT-GII GIIM rpmG Neighborhood of RT #6 [1802119, 1806143] RVT-GII GIIM PRK10748 XerC Neighborhood of RT #7 [2196276, 2202129] type_I_sec_TolC RVT-GII GIIM PRK05749 LysR Neighborhood of RT #8 [2233835, 2242360] PRK01117 RVT-GII GIIM Tar PRK11642 Feature: gene Location: 505160-505363 bp Feature: domain Description: yjbJ Location: 505163-505358 bp Feature: domain Description: yjbJ Location: 5051 63-505358 bp Feature: gene Location: 505416-505769 bp Feature: domain Description: OsmY Location: 505461-505749 bp Feature: domain Description: OsmY Location: 505461 -505749 bp Feature: gene Location: 506138-507463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 506399-507014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 506399-50701 4 bp Feature: domain Description: GIIM Note: maturase Location: 507068-507296 bp Feature: domain Description: GIIM Note: maturase Location: 507068-507296 bp Feature: gene Location: 507399-507878 bp Feature: gene Location: 508042-510147 bp Feature: domain Description: polynuc_phos Location: 508069-510118 bp Feature: domain Description: polynuc_phos Location: 508069-51 01 1 8 bp Feature: gene Location: 558912-562670 bp Feature: domain Description: CHASE Location: 559203-559758 bp Feature: domain Description: CHASE Location: 559203-559758 bp Feature: domain Description: sensory_box Location: 560019-560352 bp Feature: domain Description: sensory_box Location: 56001 9-560352 bp Feature: domain Description: PAS_4 Location: 560367-560700 bp Feature: domain Description: PAS_4 Location: 560367-560700 bp Feature: domain Description: TMAO_torS Location: 560709-561750 bp Feature: domain Description: TMAO_torS Location: 560709-561 750 bp Feature: domain Description: TMAO_torS Location: 561849-562086 bp Feature: domain Description: TMAO_torS Location: 561 849-562086 bp Feature: domain Description: TMAO_torS Location: 562248-562629 bp Feature: domain Description: TMAO_torS Location: 562248-562629 bp Feature: gene Location: 562899-563306 bp Feature: domain Description: GIIM Note: maturase Location: 562911-563139 bp Feature: domain Description: GIIM Note: maturase Location: 56291 1 -5631 39 bp Feature: gene Location: 563364-564230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563625-564216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563625-56421 6 bp Feature: gene Location: 564804-565460 bp Feature: domain Description: PRK10510 Location: 564807-565458 bp Feature: domain Description: PRK1 051 0 Location: 564807-565458 bp Feature: gene Location: 565605-566273 bp Feature: domain Description: PRK10510 Location: 565623-566259 bp Feature: domain Description: PRK1 051 0 Location: 565623-566259 bp Feature: gene Location: 1146425-1147063 bp Feature: domain Description: hisH Location: 1146428-1147052 bp Feature: domain Description: hisH Location: 1 1 46428-1 1 47052 bp Feature: gene Location: 1147064-1147669 bp Feature: domain Description: hisB Location: 1147085-1147667 bp Feature: domain Description: hisB Location: 1 1 47085-1 1 47667 bp Feature: gene Location: 1147836-1149203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1148166-1148784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 481 66-1 1 48784 bp Feature: domain Description: GIIM Note: maturase Location: 1148841-1149051 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 48841 -1 1 49051 bp Feature: gene Location: 1149295-1149795 bp Feature: gene Location: 1149641-1151299 bp Feature: domain Description: MFS_OFA_like Location: 1149728-1151084 bp Feature: domain Description: MFS_OFA_like Location: 1 1 49728-1 1 51 084 bp Feature: gene Location: 1175928-1177247 bp Feature: domain Description: OprD Location: 1175997-1177239 bp Feature: domain Description: OprD Location: 1 1 75997-1 1 77239 bp Feature: gene Location: 1177672-1178655 bp Feature: domain Description: PAS_3 Location: 1177855-1178074 bp Feature: domain Description: PAS_3 Location: 1 1 77855-1 1 78074 bp Feature: domain Description: GGDEF Location: 1178125-1178647 bp Feature: domain Description: GGDEF Location: 1 1 781 25-1 1 78647 bp Feature: gene Location: 1178792-1180159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1179122-1179740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 791 22-1 1 79740 bp Feature: domain Description: GIIM Note: maturase Location: 1179797-1180007 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 79797-1 1 80007 bp Feature: gene Location: 1180251-1180493 bp Feature: gene Location: 1180592-1181842 bp Feature: domain Description: OLE1 Location: 1180679-1181417 bp Feature: domain Description: OLE1 Location: 1 1 80679-1 1 81 41 7 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1181465-1181813 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1 1 81 465-1 1 81 81 3 bp Feature: gene Location: 1249011-1249235 bp Feature: gene Location: 1249350-1249478 bp Feature: gene Location: 1249485-1250810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1249746-1250361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 249746-1 250361 bp Feature: domain Description: GIIM Note: maturase Location: 1250415-1250643 bp Feature: domain Description: GIIM Note: maturase Location: 1 25041 5-1 250643 bp Feature: gene Location: 1250746-1251225 bp Feature: gene Location: 1251388-1251543 bp Feature: domain Description: rpmG Location: 1251391-1251535 bp Feature: domain Description: rpmG Location: 1 251 391 -1 251 535 bp Feature: gene Location: 1802119-1802442 bp Feature: gene Location: 1802600-1803079 bp Feature: gene Location: 1803015-1804340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1803276-1803891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 803276-1 803891 bp Feature: domain Description: GIIM Note: maturase Location: 1803945-1804173 bp Feature: domain Description: GIIM Note: maturase Location: 1 803945-1 8041 73 bp Feature: gene Location: 1804543-1805244 bp Feature: domain Description: PRK10748 Location: 1804552-1805227 bp Feature: domain Description: PRK1 0748 Location: 1 804552-1 805227 bp Feature: gene Location: 1805241-1806143 bp Feature: domain Description: XerC Location: 1805250-1806129 bp Feature: domain Description: XerC Location: 1 805250-1 8061 29 bp Feature: gene Location: 2196276-2196470 bp Feature: gene Location: 2196645-2198087 bp Feature: domain Description: type_I_sec_TolC Location: 2196732-2197998 bp Feature: domain Description: type_I_sec_TolC Location: 21 96732-21 97998 bp Feature: gene Location: 2198710-2199561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2198806-2199112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 98806-21 991 1 2 bp Feature: domain Description: GIIM Note: maturase Location: 2199166-2199394 bp Feature: domain Description: GIIM Note: maturase Location: 21 991 66-21 99394 bp Feature: gene Location: 2199774-2201039 bp Feature: domain Description: PRK05749 Location: 2199777-2201034 bp Feature: domain Description: PRK05749 Location: 21 99777-2201 034 bp Feature: gene Location: 2201242-2202129 bp Feature: domain Description: LysR Location: 2201254-2202118 bp Feature: domain Description: LysR Location: 2201 254-22021 1 8 bp Feature: gene Location: 2233835-2235130 bp Feature: domain Description: PRK01117 Location: 2233844-2235125 bp Feature: domain Description: PRK01 1 1 7 Location: 2233844-22351 25 bp Feature: gene Location: 2235293-2235772 bp Feature: gene Location: 2235708-2237033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2235969-2236584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2235969-2236584 bp Feature: domain Description: GIIM Note: maturase Location: 2236638-2236866 bp Feature: domain Description: GIIM Note: maturase Location: 2236638-2236866 bp Feature: gene Location: 2237214-2239148 bp Feature: domain Description: Tar Location: 2238003-2239146 bp Feature: domain Description: Tar Location: 2238003-22391 46 bp Feature: gene Location: 2239838-2242360 bp Feature: domain Description: PRK11642 Location: 2239856-2242274 bp Feature: domain Description: PRK1 1 642 Location: 2239856-2242274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT yjbJ (COG3237), OsmY (COG2823), RVT-GII, GIIM (pfam08388), polynuc_phos (TIGR03591), CHASE (smart01079), sensory_box (TIGR00229), PAS_4 (pfam08448), TMAO_torS (TIGR02956), PRK10510 (OmpA family lipoprotein)
hisH (PRK14004), hisB (PRK13598), MFS_OFA_like (cd17353), OprD (pfam03573), PAS_3 (pfam08447), GGDEF (TIGR00254), OLE1 (COG1398), DDE_Tnp_ISL3 (pfam01610), rpmG (PRK00595), PRK10748 (5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB)
XerC (COG4973), type_I_sec_TolC (TIGR01844), PRK05749 (3-deoxy-D-manno-octulosonic-acid transferase; Reviewed), LysR (COG0583), PRK01117 (adenylosuccinate synthetase; Provisional), Tar (COG0840), PRK11642 (ribonuclease R)

Seq: JACDUD010000002.1 Pseudomonas oleovorans strain B9D3C Ga0416738_02, whole genome shotgun sequence (1835053 bp)
Overview 1 RT 1: 140179-147289 bp 2 RT 2: 527493-538149 bp 3 RT 3: 849080-852344 bp 4 RT 4: 1459238-1463610 bp 5 RT 5: 1471930-1476963 bp Neighborhood of RT #1 [140179, 147297] PRK05657 RVT-GII GIIM PreA DUF3470 mutS1 Neighborhood of RT #2 [527493, 538178] Arm-DNA-bind_3 INT_P4_C RVT-GII GIIM recC recB Neighborhood of RT #3 [849080, 852344] IstB_IS21_ATP IstB_IS21 RVT-GII GIIM Neighborhood of RT #4 [1459238, 1463678] PRK09984 Arc RVT-GII GIIM IstB_IS21_ATP IstB_IS21 Neighborhood of RT #5 [1471930, 1476980] MgtE DUF4124 SmpA_OmlA RVT-GII GIIM PRK01712 Feature: gene Location: 140179-141186 bp Feature: domain Description: PRK05657 Location: 140299-141181 bp Feature: domain Description: PRK05657 Location: 1402 99-141181 bp Feature: gene Location: 141343-141822 bp Feature: gene Location: 141758-143083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142019-142634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142 019-142 634 bp Feature: domain Description: GIIM Note: maturase Location: 142688-142916 bp Feature: domain Description: GIIM Note: maturase Location: 142 688-142 916 bp Feature: gene Location: 144267-144590 bp Feature: domain Description: PreA Location: 144279-144459 bp Feature: domain Description: PreA Location: 1442 79-144459 bp Feature: domain Description: DUF3470 Location: 144465-144588 bp Feature: domain Description: DUF3470 Location: 144465-144588 bp Feature: gene Location: 144730-147297 bp Feature: domain Description: mutS1 Location: 144751-147289 bp Feature: domain Description: mutS1 Location: 144751-1472 89 bp Feature: gene Location: 527493-528845 bp Feature: domain Description: Arm-DNA-bind_3 Location: 527508-527784 bp Feature: domain Description: Arm-DNA-bind_3 Location: 52 7508-52 7784 bp Feature: domain Description: INT_P4_C Location: 528225-528816 bp Feature: domain Description: INT_P4_C Location: 52 82 2 5-52 8816 bp Feature: gene Location: 529247-529726 bp Feature: gene Location: 529662-530939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 529923-530520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 992 3-53052 0 bp Feature: domain Description: GIIM Note: maturase Location: 530577-530787 bp Feature: domain Description: GIIM Note: maturase Location: 530577-530787 bp Feature: gene Location: 531139-534552 bp Feature: domain Description: recC Location: 531175-534406 bp Feature: domain Description: recC Location: 531175-534406 bp Feature: gene Location: 534549-538178 bp Feature: domain Description: recB Location: 534576-538149 bp Feature: domain Description: recB Location: 534576-538149 bp Feature: gene Location: 849080-849829 bp Feature: domain Description: IstB_IS21_ATP Location: 849152-849230 bp Feature: domain Description: IstB_IS2 1_ATP Location: 849152 -8492 30 bp Feature: domain Description: IstB_IS21 Location: 849242-849770 bp Feature: domain Description: IstB_IS2 1 Location: 8492 42 -849770 bp Feature: gene Location: 850384-850863 bp Feature: gene Location: 850799-851803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 851060-851675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 851060-851675 bp Feature: gene Location: 851779-852123 bp Feature: domain Description: GIIM Note: maturase Location: 851785-851956 bp Feature: domain Description: GIIM Note: maturase Location: 851785-851956 bp Feature: gene Location: 852216-852344 bp Feature: gene Location: 1459238-1460062 bp Feature: domain Description: PRK09984 Location: 1459241-1459976 bp Feature: domain Description: PRK09984 Location: 14592 41-1459976 bp Feature: gene Location: 1460455-1460772 bp Feature: domain Description: Arc Location: 1460479-1460626 bp Feature: domain Description: Arc Location: 1460479-146062 6 bp Feature: gene Location: 1460850-1462175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1461111-1461726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1461111-146172 6 bp Feature: domain Description: GIIM Note: maturase Location: 1461780-1462008 bp Feature: domain Description: GIIM Note: maturase Location: 1461780-1462 008 bp Feature: gene Location: 1462454-1462594 bp Feature: gene Location: 1462923-1463678 bp Feature: domain Description: IstB_IS21_ATP Location: 1462995-1463079 bp Feature: domain Description: IstB_IS2 1_ATP Location: 1462 995-1463079 bp Feature: domain Description: IstB_IS21 Location: 1463082-1463610 bp Feature: domain Description: IstB_IS2 1 Location: 1463082 -1463610 bp Feature: gene Location: 1471930-1473372 bp Feature: domain Description: MgtE Location: 1472053-1473367 bp Feature: domain Description: MgtE Location: 1472 053-1473367 bp Feature: gene Location: 1473696-1474190 bp Feature: domain Description: DUF4124 Location: 1473753-1473849 bp Feature: domain Description: DUF412 4 Location: 1473753-1473849 bp Feature: domain Description: SmpA_OmlA Location: 1474026-1474185 bp Feature: domain Description: SmpA_OmlA Location: 147402 6-1474185 bp Feature: gene Location: 1474284-1475636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1474599-1475217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1474599-14752 17 bp Feature: domain Description: GIIM Note: maturase Location: 1475274-1475484 bp Feature: domain Description: GIIM Note: maturase Location: 14752 74-1475484 bp Feature: gene Location: 1475728-1475970 bp Feature: gene Location: 1476795-1476980 bp Feature: domain Description: PRK01712 Location: 1476798-1476963 bp Feature: domain Description: PRK01712 Location: 1476798-1476963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05657 (RNA polymerase sigma factor RpoS; Validated), RVT-GII, GIIM (pfam08388), PreA (COG1146), DUF3470 (pfam11953), mutS1 (TIGR01070), Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), recC (TIGR01450), recB (TIGR00609)
IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), PRK09984 (phosphonate ABC transporter ATP-binding protein), Arc (pfam03869), MgtE (pfam01769), DUF4124 (pfam13511), SmpA_OmlA (pfam04355), PRK01712 (carbon storage regulator CsrA)