myRT

myRT report for GCA_013778545.1_ASM1377854v1

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Seq: JAATOH010000025.1 Lactobacillus crispatus strain DSM 29598 320, whole genome shotgun sequence (6933 bp)
Overview 1 RT 1: 1523-6452 bp Neighborhood of RT #1 [1523, 6487] RVT-AbiA HEPN_AbiA_CTD HTH_TipAL-Mta RmlD_sub_bind YafQ_toxin Feature: gene Location: 1523-1666 bp Feature: gene Location: 1841-2671 bp Feature: gene Location: 2705-4666 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 3074-3572 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 3074-3572 bp Feature: domain Description: HEPN_AbiA_CTD Location: 4214-4631 bp Feature: domain Description: HEPN_AbiA_CTD Location: 421 4-4631 bp Feature: gene Location: 4826-6103 bp Feature: domain Description: HTH_TipAL-Mta Location: 4865-5174 bp Feature: domain Description: HTH_TipAL-Mta Location: 4865-51 74 bp Feature: domain Description: RmlD_sub_bind Location: 5423-6065 bp Feature: domain Description: RmlD_sub_bind Location: 5423-6065 bp Feature: gene Location: 6182-6487 bp Feature: domain Description: YafQ_toxin Location: 6188-6452 bp Feature: domain Description: YafQ_toxin Location: 61 88-6452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiA, HEPN_AbiA_CTD (pfam18732), HTH_TipAL-Mta (cd01106), RmlD_sub_bind (pfam04321), YafQ_toxin (pfam15738)

Seq: JAATOH010000039.1 Lactobacillus crispatus strain DSM 29598 353, whole genome shotgun sequence (48075 bp)
Overview 1 RT 1: 26558-30605 bp Neighborhood of RT #1 [26558, 30634] COG2461 QdoI RVT-GII RVT-GII GIIM cysteine_hydrolases Feature: gene Location: 26558-26983 bp Feature: domain Description: COG2461 Location: 26567-26948 bp Feature: domain Description: COG2 461 Location: 2 6567-2 6948 bp Feature: gene Location: 27498-27911 bp Feature: domain Description: QdoI Location: 27573-27876 bp Feature: domain Description: QdoI Location: 2 7573-2 7876 bp Feature: gene Location: 28525-28944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28726-28933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 872 6-2 8933 bp Feature: gene Location: 29054-29824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29057-29345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9057-2 9345 bp Feature: domain Description: GIIM Note: maturase Location: 29402-29609 bp Feature: domain Description: GIIM Note: maturase Location: 2 9402 -2 9609 bp Feature: gene Location: 29910-30077 bp Feature: gene Location: 30089-30634 bp Feature: domain Description: cysteine_hydrolases Location: 30101-30605 bp Feature: domain Description: cysteine_hydrolases Location: 30101-30605 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2461 (Uncharacterized conserved protein, DUF438 domain, may contain hemerythrin domain ), QdoI (COG1917), RVT-GII, GIIM (pfam08388), cysteine_hydrolases (cl00220)

Seq: JAATOH010000047.1 Lactobacillus crispatus strain DSM 29598 361, whole genome shotgun sequence (77121 bp)
Overview 1 RT 1: 33307-37696 bp Neighborhood of RT #1 [33307, 37752] DHDPS-like PurR RVT-GII GIIM DUF3100 Feature: gene Location: 33307-34266 bp Feature: domain Description: DHDPS-like Location: 33337-34219 bp Feature: domain Description: DHDPS-like Location: 3 3 3 3 7-3 4219 bp Feature: gene Location: 34280-35272 bp Feature: domain Description: PurR Location: 34286-35270 bp Feature: domain Description: PurR Location: 3 4286-3 5270 bp Feature: gene Location: 35879-36214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35882-35984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 5882-3 5984 bp Feature: domain Description: GIIM Note: maturase Location: 36038-36209 bp Feature: domain Description: GIIM Note: maturase Location: 3 603 8-3 6209 bp Feature: gene Location: 36450-36941 bp Feature: gene Location: 36934-37752 bp Feature: domain Description: DUF3100 Location: 36994-37696 bp Feature: domain Description: DUF3 100 Location: 3 6994-3 7696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DHDPS-like (cd00408), PurR (COG1609), RVT-GII, GIIM (pfam08388), DUF3100 (pfam11299)

Seq: JAATOH010000048.1 Lactobacillus crispatus strain DSM 29598 362, whole genome shotgun sequence (34877 bp)
Overview 1 RT 1: 14058-17977 bp Neighborhood of RT #1 [14058, 18093] PRK09311 ribH RVT-GII group_II_RT_mat Tra8 Feature: gene Location: 14058-15236 bp Feature: domain Description: PRK09311 Location: 14067-15228 bp Feature: domain Description: PRK09311 Location: 14 067-15228 bp Feature: gene Location: 15251-15715 bp Feature: domain Description: ribH Location: 15254-15710 bp Feature: domain Description: ribH Location: 15254 -15710 bp Feature: gene Location: 16078-16380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16081-16255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16081-16255 bp Feature: gene Location: 16428-16610 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 16461-16584 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 164 61-16584 bp Feature: gene Location: 17482-18093 bp Feature: domain Description: Tra8 Location: 17512-17977 bp Feature: domain Description: Tra8 Location: 17512-17977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09311 (bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II), ribH (PRK00061), RVT-GII, group_II_RT_mat (TIGR04416), Tra8 (COG2826)

Seq: JAATOH010000049.1 Lactobacillus crispatus strain DSM 29598 363, whole genome shotgun sequence (40541 bp)
Overview 1 RT 1: 7309-12179 bp Neighborhood of RT #1 [7309, 12196] RVT-GII GIIM YSIRK_signal GH43_GsAbnA-like GH43_C SlpA SlpA Feature: gene Location: 7309-7608 bp Feature: gene Location: 7687-8307 bp Feature: gene Location: 8479-9147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8491-8668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8491-8668 bp Feature: domain Description: GIIM Note: maturase Location: 8722-8935 bp Feature: domain Description: GIIM Note: maturase Location: 8722-8935 bp Feature: gene Location: 9401-9532 bp Feature: gene Location: 9728-12196 bp Feature: domain Description: YSIRK_signal Location: 9752-9827 bp Feature: domain Description: YSIRK_signal Location: 975 2-9827 bp Feature: domain Description: GH43_GsAbnA-like Location: 10205-11345 bp Feature: domain Description: GH43_GsAbnA-like Location: 10205 -11345 bp Feature: domain Description: GH43_C Location: 11372-11714 bp Feature: domain Description: GH43_C Location: 11372-11714 bp Feature: domain Description: SlpA Location: 11834-11993 bp Feature: domain Description: SlpA Location: 11834-11993 bp Feature: domain Description: SlpA Location: 12020-12179 bp Feature: domain Description: SlpA Location: 12020-12179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YSIRK_signal (TIGR01168), GH43_GsAbnA-like (cd18832), GH43_C (pfam16369), SlpA (COG1047)