myRT

myRT report for GCA_013792135.1_ASM1379213v1

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Seq: VMSP01000086.1 Desulfocapsa sp. isolate N3_15 k141_106148, whole genome shotgun sequence (7463 bp)
Overview 1 RT 1: 4977-7448 bp Neighborhood of RT #1 [4977, 7462] INT_RitB_C_like Phage_int_SAM_1 INT_RitA_C_like RVT-GII Feature: gene Location: 4977-5816 bp Feature: domain Description: INT_RitB_C_like Location: 5313-5739 bp Feature: domain Description: INT_RitB_C_like Location: 531 3-5739 bp Feature: gene Location: 5809-7095 bp Feature: domain Description: Phage_int_SAM_1 Location: 6211-6448 bp Feature: domain Description: Phage_int_SAM_1 Location: 621 1 -6448 bp Feature: domain Description: INT_RitA_C_like Location: 6529-7060 bp Feature: domain Description: INT_RitA_C_like Location: 6529-7060 bp Feature: gene Location: 7190-7462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7193-7448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 93-7448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), RVT-GII

Seq: VMSP01000046.1 Desulfocapsa sp. isolate N3_15 k141_151475, whole genome shotgun sequence (8976 bp)
Overview 1 RT 1: 2-2733 bp Neighborhood of RT #1 [2, 2733] RVT-GII GIIM Peptidase_C14 Feature: gene Location: 2-157 bp Feature: gene Location: 171-323 bp Feature: gene Location: 366-884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 372-504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 372 -504 bp Feature: domain Description: GIIM Note: maturase Location: 585-807 bp Feature: domain Description: GIIM Note: maturase Location: 585-807 bp Feature: gene Location: 1073-2404 bp Feature: domain Description: Peptidase_C14 Location: 1151-1742 bp Feature: domain Description: Peptidase_C14 Location: 1151-1742 bp Feature: gene Location: 2407-2733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Peptidase_C14 (pfam00656)

Seq: VMSP01000054.1 Desulfocapsa sp. isolate N3_15 k141_164084, whole genome shotgun sequence (10413 bp)
Overview 1 RT 1: 3-3213 bp Neighborhood of RT #1 [3, 3257] RVT-GII TIR_2 GH130_Lin0857-like Feature: gene Location: 3-200 bp Feature: gene Location: 130-837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 277-460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 277-460 bp Feature: gene Location: 1182-2021 bp Feature: domain Description: TIR_2 Location: 1224-1581 bp Feature: domain Description: TIR_2 Location: 1224-1581 bp Feature: gene Location: 2094-3257 bp Feature: domain Description: GH130_Lin0857-like Location: 2217-3213 bp Feature: domain Description: GH13 0_Lin0857-like Location: 2217-3 213 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TIR_2 (pfam13676), GH130_Lin0857-like (cd18612)

Seq: VMSP01000009.1 Desulfocapsa sp. isolate N3_15 k141_16444, whole genome shotgun sequence (1159 bp)
Overview 1 RT 1: 1-1158 bp Neighborhood of RT #1 [1, 1158] RVT-GII Feature: gene Location: 1-711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292-712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292-712 bp Feature: gene Location: 928-1158 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VMSP01000170.1 Desulfocapsa sp. isolate N3_15 k141_189239, whole genome shotgun sequence (98115 bp)
Overview 1 RT 1: 65965-70335 bp Neighborhood of RT #1 [65965, 70352] UbiE RVT-UG7 PRK10590 Feature: gene Location: 65965-66186 bp Feature: gene Location: 66436-67077 bp Feature: domain Description: UbiE Location: 66448-66943 bp Feature: domain Description: UbiE Location: 66448-66943 bp Feature: gene Location: 67268-68848 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 67688-68081 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 67688-68081 bp Feature: gene Location: 68894-69076 bp Feature: gene Location: 69075-70352 bp Feature: domain Description: PRK10590 Location: 69078-70335 bp Feature: domain Description: PRK105 90 Location: 69078-70335 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UbiE (COG2226), RVT-UG7, PRK10590 (ATP-dependent RNA helicase RhlE; Provisional)

Seq: VMSP01000070.1 Desulfocapsa sp. isolate N3_15 k141_218693, whole genome shotgun sequence (10894 bp)
Overview 1 RT 1: 163-3000 bp Neighborhood of RT #1 [163, 3000] Zn_Tnp_IS1595 DDE_Tnp_IS1595 rve_3 RVT-UG4 Feature: gene Location: 163-801 bp Feature: domain Description: Zn_Tnp_IS1595 Location: 250-379 bp Feature: domain Description: Zn_Tnp_IS1595 Location: 250-379 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 586-784 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 586 -784 bp Feature: gene Location: 1195-1563 bp Feature: domain Description: rve_3 Location: 1471-1555 bp Feature: domain Description: rve_3 Location: 1471-1555 bp Feature: gene Location: 1799-2149 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1805-2126 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1805-2126 bp Feature: gene Location: 2176-2328 bp Feature: gene Location: 2365-3000 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS1595 (pfam12760), DDE_Tnp_IS1595 (pfam12762), rve_3 (pfam13683), RVT-UG4

Seq: VMSP01000185.1 Desulfocapsa sp. isolate N3_15 k141_263582, whole genome shotgun sequence (24989 bp)
Overview 1 RT 1: 153-2027 bp Neighborhood of RT #1 [153, 2027] RVT-GII Feature: gene Location: 153-1016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459-966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459-966 bp Feature: gene Location: 1178-1405 bp Feature: gene Location: 1662-2027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VMSP01000184.1 Desulfocapsa sp. isolate N3_15 k141_52007, whole genome shotgun sequence (1197 bp)
Overview 1 RT 1: 312-1110 bp Neighborhood of RT #1 [312, 1196] RVT-GII GIIM Feature: gene Location: 312-1196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 315-819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 315-8 19 bp Feature: domain Description: GIIM Note: maturase Location: 888-1110 bp Feature: domain Description: GIIM Note: maturase Location: 8 8 8 -1110 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VMSP01000144.1 Desulfocapsa sp. isolate N3_15 k141_57814, whole genome shotgun sequence (1256 bp)
Overview 1 RT 1: 3-1078 bp Neighborhood of RT #1 [3, 1095] RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 3-569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-183 bp Feature: domain Description: GIIM Note: maturase Location: 270-483 bp Feature: domain Description: GIIM Note: maturase Location: 270-483 bp Feature: gene Location: 679-1095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 685-787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 685-787 bp Feature: domain Description: GIIM Note: maturase Location: 856-1078 bp Feature: domain Description: GIIM Note: maturase Location: 856-1078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VMSP01000027.1 Desulfocapsa sp. isolate N3_15 k141_68626, whole genome shotgun sequence (35815 bp)
Overview 1 RT 1: 32049-35532 bp Neighborhood of RT #1 [32049, 35582] COG4447 Rax2 COG4447 COG4447 COG4447 COG4447 RVT-GII Feature: gene Location: 32049-33857 bp Feature: domain Description: COG4447 Location: 32136-32277 bp Feature: domain Description: COG4447 Location: 32136-32277 bp Feature: domain Description: Rax2 Location: 32340-32403 bp Feature: domain Description: Rax2 Location: 32340-32403 bp Feature: domain Description: COG4447 Location: 32418-32610 bp Feature: domain Description: COG4447 Location: 32418-32610 bp Feature: domain Description: COG4447 Location: 32856-33120 bp Feature: domain Description: COG4447 Location: 32856-33120 bp Feature: domain Description: COG4447 Location: 33162-33345 bp Feature: domain Description: COG4447 Location: 33162-33345 bp Feature: domain Description: COG4447 Location: 33387-33810 bp Feature: domain Description: COG4447 Location: 33387-33810 bp Feature: gene Location: 34123-34557 bp Feature: gene Location: 34719-35582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35025-35532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35025-35532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4447 (Uncharacterized protein related to plant photosystem II stability/assembly factor ), Rax2 (pfam12768), RVT-GII

Seq: VMSP01000038.1 Desulfocapsa sp. isolate N3_15 k141_79576, whole genome shotgun sequence (3123 bp)
Overview 1 RT 1: 509-3004 bp Neighborhood of RT #1 [509, 3120] dCache_2 SatP RVT-GII GIIM group_II_RT_mat Feature: gene Location: 509-988 bp Feature: domain Description: dCache_2 Location: 701-974 bp Feature: domain Description: dCache_2 Location: 701-974 bp Feature: gene Location: 1042-1611 bp Feature: domain Description: SatP Location: 1057-1597 bp Feature: domain Description: SatP Location: 1057-1597 bp Feature: gene Location: 2036-2524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2042-2138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2042-2138 bp Feature: domain Description: GIIM Note: maturase Location: 2207-2438 bp Feature: domain Description: GIIM Note: maturase Location: 2207-2438 bp Feature: gene Location: 2638-3120 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2641-3004 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2641-3004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dCache_2 (pfam08269), SatP (COG1584), RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416)