myRT

myRT report for GCA_013815535.1_ASM1381553v1

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Seq: JACDGC010000016.1 Ktedonobacterales bacterium isolate MGR_bin402 SD2908_NODE_1113_length_19232_cov_0.882544, whole genome shotgun sequence (19232 bp)
Overview 1 RT 1: 3939-10446 bp Neighborhood of RT #1 [3939, 10446] ThiL RVT-Retrons Feature: gene Location: 3939-4148 bp Feature: gene Location: 4334-5368 bp Feature: domain Description: ThiL Location: 4367-5270 bp Feature: domain Description: ThiL Location: 4367-5270 bp Feature: gene Location: 5557-6951 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6106-6718 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 61 06-671 8 bp Feature: gene Location: 6972-8519 bp Feature: gene Location: 8683-10446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ThiL (COG0611), RVT-Retrons

Seq: JACDGC010000051.1 Ktedonobacterales bacterium isolate MGR_bin402 SD2908_NODE_2426_length_11757_cov_1.181857, whole genome shotgun sequence (11757 bp)
Overview 1 RT 1: 5990-11611 bp Neighborhood of RT #1 [5990, 11611] Avd_like RVT-DGRs TIR_2 YfmG Feature: gene Location: 5990-6235 bp Feature: gene Location: 6331-6705 bp Feature: domain Description: Avd_like Location: 6349-6661 bp Feature: domain Description: Avd_like Location: 6349-6661 bp Feature: gene Location: 6683-7774 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6899-7550 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6899-7550 bp Feature: gene Location: 7911-9185 bp Feature: domain Description: TIR_2 Location: 7932-8295 bp Feature: domain Description: TIR_2 Location: 7932 -82 95 bp Feature: domain Description: YfmG Location: 8418-9165 bp Feature: domain Description: YfmG Location: 8418-9165 bp Feature: gene Location: 9293-11611 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, TIR_2 (pfam13676), YfmG (COG1262)

Seq: JACDGC010000159.1 Ktedonobacterales bacterium isolate MGR_bin402 SD2908_NODE_4601_length_7608_cov_1.177383, whole genome shotgun sequence (7608 bp)
Overview 1 RT 1: 1-2917 bp Neighborhood of RT #1 [1, 3030] YfmG RVT-DGRs nirV Feature: gene Location: 1-1083 bp Feature: domain Description: YfmG Location: 226-1060 bp Feature: domain Description: YfmG Location: 226-1060 bp Feature: gene Location: 1336-2394 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1543-2194 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1543 -2194 bp Feature: gene Location: 2421-2663 bp Feature: gene Location: 2728-3030 bp Feature: domain Description: nirV Location: 2806-2917 bp Feature: domain Description: nirV Location: 2806-2917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, nirV (LOAD_nirV)

Seq: JACDGC010000286.1 Ktedonobacterales bacterium isolate MGR_bin402 SD2908_NODE_6890_length_5753_cov_0.942232, whole genome shotgun sequence (5753 bp)
Overview 1 RT 1: 512-5571 bp Neighborhood of RT #1 [512, 5750] Ser_Recombinase PinE TIR_2 TPR YfmG RVT-DGRs Feature: gene Location: 512-2548 bp Feature: domain Description: Ser_Recombinase Location: 602-1010 bp Feature: domain Description: Ser_Recombinase Location: 602-1010 bp Feature: domain Description: PinE Location: 2336-2516 bp Feature: domain Description: PinE Location: 2336-2516 bp Feature: gene Location: 2586-4460 bp Feature: domain Description: TIR_2 Location: 2661-3027 bp Feature: domain Description: TIR_2 Location: 2661-3027 bp Feature: domain Description: TPR Location: 3222-3519 bp Feature: domain Description: TPR Location: 3222-3519 bp Feature: domain Description: YfmG Location: 3606-4437 bp Feature: domain Description: YfmG Location: 3606-4 4 37 bp Feature: gene Location: 4713-5750 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4920-5571 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4 920-5571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIR_2 (pfam13676), TPR (smart00028), YfmG (COG1262), RVT-DGRs, Ser_Recombinase (cl02788), PinE (COG1961)