myRT

myRT report for GCA_013816505.1_ASM1381650v1

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Seq: JACDEG010000211.1 Pyrinomonadaceae bacterium isolate MGR_bin354 SD2902_NODE_1228_length_9850_cov_1.415921, whole genome shotgun sequence (9850 bp)
Overview 1 RT 1: 6010-9628 bp Neighborhood of RT #1 [6010, 9642] XerC RVT-Retrons Trypsin_2 COG4679 Feature: gene Location: 6010-6177 bp Feature: gene Location: 6428-7423 bp Feature: domain Description: XerC Location: 6500-7379 bp Feature: domain Description: XerC Location: 6500-7379 bp Feature: gene Location: 7444-9108 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7600-8212 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7600-821 2 bp Feature: domain Description: Trypsin_2 Location: 8584-8998 bp Feature: domain Description: Trypsin_2 Location: 8584-8998 bp Feature: gene Location: 9406-9642 bp Feature: domain Description: COG4679 Location: 9427-9628 bp Feature: domain Description: COG4679 Location: 9427-9628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerC (COG4973), RVT-Retrons, Trypsin_2 (pfam13365), COG4679 (Phage-related protein )

Seq: JACDEG010000254.1 Pyrinomonadaceae bacterium isolate MGR_bin354 SD2902_NODE_1509_length_8701_cov_1.121880, whole genome shotgun sequence (8701 bp)
Overview 1 RT 1: 2833-8412 bp Neighborhood of RT #1 [2833, 8465] Mrr_cat RVT-GII Intron_maturas2 HNHc DUF1016_N RMtype1_S_EcoEI-TRD1-CR1_like RMtype1_S_EcoEI-TRD1-CR1_like Feature: gene Location: 2833-3804 bp Feature: domain Description: Mrr_cat Location: 3379-3730 bp Feature: domain Description: Mrr_cat Location: 3379-3730 bp Feature: gene Location: 4097-4273 bp Feature: gene Location: 4368-6155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4629-5424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462 9-542 4 bp Feature: domain Description: Intron_maturas2 Location: 5529-5763 bp Feature: domain Description: Intron_maturas2 Location: 552 9-5763 bp Feature: domain Description: HNHc Note: nucleases Location: 5955-6108 bp Feature: domain Description: HNHc Note: nucleases Location: 5955-6108 bp Feature: gene Location: 6613-7248 bp Feature: domain Description: DUF1016_N Location: 6664-7072 bp Feature: domain Description: DUF1016_N Location: 6664-7072 bp Feature: gene Location: 7248-8465 bp Feature: domain Description: RMtype1_S_EcoEI-TRD1-CR1_like Location: 7575-7839 bp Feature: domain Description: RMtype1_S_EcoEI-TRD1-CR1_like Location: 7575-7839 bp Feature: domain Description: RMtype1_S_EcoEI-TRD1-CR1_like Location: 7929-8412 bp Feature: domain Description: RMtype1_S_EcoEI-TRD1-CR1_like Location: 792 9-8412 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mrr_cat (pfam04471), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF1016_N (pfam17761), RMtype1_S_EcoEI-TRD1-CR1_like (cd17260)

Seq: JACDEG010000039.1 Pyrinomonadaceae bacterium isolate MGR_bin354 SD2902_NODE_358_length_20491_cov_1.382636, whole genome shotgun sequence (20491 bp)
Overview 1 RT 1: 11571-19704 bp Neighborhood of RT #1 [11571, 19704] PRK11091 sensory_box GAF_2 sensory_box PRK11107 PRK11107 TMAO_torS PleD RVT-GII GIIM DDE_Tnp_IS240 Feature: gene Location: 11571-15797 bp Feature: domain Description: PRK11091 Location: 12180-12579 bp Feature: domain Description: PRK11091 Location: 12180-12579 bp Feature: domain Description: sensory_box Location: 12582-12945 bp Feature: domain Description: sensory_box Location: 12582-12945 bp Feature: domain Description: GAF_2 Location: 12990-13407 bp Feature: domain Description: GAF_2 Location: 12990-13 407 bp Feature: domain Description: sensory_box Location: 13443-13803 bp Feature: domain Description: sensory_box Location: 13 443 -13 803 bp Feature: domain Description: PRK11107 Location: 13809-14553 bp Feature: domain Description: PRK11107 Location: 13 809-14553 bp Feature: domain Description: PRK11107 Location: 14559-14973 bp Feature: domain Description: PRK11107 Location: 14559-14973 bp Feature: domain Description: TMAO_torS Location: 15024-15711 bp Feature: domain Description: TMAO_torS Location: 15024-15711 bp Feature: gene Location: 15886-16809 bp Feature: domain Description: PleD Location: 15892-16786 bp Feature: domain Description: PleD Location: 15892-16786 bp Feature: gene Location: 17653-19014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17962-18649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17962-18649 bp Feature: domain Description: GIIM Note: maturase Location: 18742-18937 bp Feature: domain Description: GIIM Note: maturase Location: 18742-1893 7 bp Feature: gene Location: 19151-19306 bp Feature: domain Description: DDE_Tnp_IS240 Location: 19157-19280 bp Feature: domain Description: DDE_Tnp_IS240 Location: 19157-19280 bp Feature: gene Location: 19498-19704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11091 (aerobic respiration control sensor protein ArcB; Provisional), sensory_box (TIGR00229), GAF_2 (pfam13185), PRK11107 (hybrid sensory histidine kinase BarA; Provisional), TMAO_torS (TIGR02956), PleD (COG3706), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS240 (pfam13610)

Seq: JACDEG010000084.1 Pyrinomonadaceae bacterium isolate MGR_bin354 SD2902_NODE_543_length_16194_cov_1.740897, whole genome shotgun sequence (16194 bp)
Overview 1 RT 1: 8822-13252 bp Neighborhood of RT #1 [8822, 13353] ArdC RVT_N RVT-GII GIIM McrA excise Feature: gene Location: 8822-9766 bp Feature: domain Description: ArdC Location: 8831-9710 bp Feature: domain Description: ArdC Location: 8831-9710 bp Feature: gene Location: 9763-10053 bp Feature: gene Location: 10732-12423 bp Feature: RT Description: RVT_N Location: 10768-11014 bp Feature: RT Description: RVT_N Location: 10768-11014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11056-11713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11056-11713 bp Feature: domain Description: GIIM Note: maturase Location: 11812-12046 bp Feature: domain Description: GIIM Note: maturase Location: 11812-1204 6 bp Feature: domain Description: McrA Location: 12121-12403 bp Feature: domain Description: McrA Location: 12121-124 03 bp Feature: gene Location: 12564-12866 bp Feature: gene Location: 13093-13353 bp Feature: domain Description: excise Location: 13123-13252 bp Feature: domain Description: excise Location: 13123-13252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), excise (TIGR01764), ArdC (COG4227)