myRT

myRT report for GCA_013821725.1_ASM1382172v1

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Seq: JACBFK010000102.1 Shigella sonnei strain c8852 contig00102, whole genome shotgun sequence (15863 bp)
Overview 1 RT 1: 7602-10877 bp Neighborhood of RT #1 [7602, 10942] Inovirus_Gp2 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 7602-7943 bp Feature: domain Description: Inovirus_Gp2 Location: 7671-7935 bp Feature: domain Description: Inovirus_Gp2 Location: 7671 -7935 bp Feature: gene Location: 7983-8429 bp Feature: domain Description: PHA02517 Location: 7986-8427 bp Feature: domain Description: PHA0251 7 Location: 7986-8427 bp Feature: gene Location: 8546-10069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8819-9551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881 9-9551 bp Feature: domain Description: GIIM Note: maturase Location: 9626-9824 bp Feature: domain Description: GIIM Note: maturase Location: 9626-9824 bp Feature: gene Location: 10023-10448 bp Feature: gene Location: 10661-10942 bp Feature: domain Description: PHA02517 Location: 10667-10877 bp Feature: domain Description: PHA0251 7 Location: 1 0667-1 0877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Inovirus_Gp2 (pfam11726), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JACBFK010000203.1 Shigella sonnei strain c8852 contig00203, whole genome shotgun sequence (5939 bp)
Overview 1 RT 1: 548-2518 bp Neighborhood of RT #1 [548, 2553] RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 548-1237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 749-1211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 749-12 11 bp Feature: gene Location: 1252-1779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1258-1402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 58-1402 bp Feature: domain Description: GIIM Note: maturase Location: 1480-1702 bp Feature: domain Description: GIIM Note: maturase Location: 1480-1702 bp Feature: gene Location: 1895-2041 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1907-2018 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1907-2 018 bp Feature: gene Location: 2068-2553 bp Feature: domain Description: COG3547 Location: 2086-2518 bp Feature: domain Description: COG3547 Location: 2 086-2 518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: JACBFK010000221.1 Shigella sonnei strain c8852 contig00221, whole genome shotgun sequence (4833 bp)
Overview 1 RT 1: 1-4234 bp Neighborhood of RT #1 [1, 4236] Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 1-144 bp Feature: domain Description: Tra5 Location: 4-127 bp Feature: domain Description: Tra5 Location: 4-127 bp Feature: gene Location: 157-1284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457-1114 bp Feature: gene Location: 1583-2110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1589-1733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1589-173 3 bp Feature: domain Description: GIIM Note: maturase Location: 1817-2033 bp Feature: domain Description: GIIM Note: maturase Location: 1817-203 3 bp Feature: gene Location: 2463-2705 bp Feature: gene Location: 2617-4236 bp Feature: domain Description: ushA Location: 2632-4234 bp Feature: domain Description: ushA Location: 263 2-423 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: JACBFK010000268.1 Shigella sonnei strain c8852 contig00268, whole genome shotgun sequence (3090 bp)
Overview 1 RT 1: 238-2761 bp Neighborhood of RT #1 [238, 2910] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 238-459 bp Feature: gene Location: 735-1517 bp Feature: domain Description: DDE_Tnp_1 Location: 741-1449 bp Feature: domain Description: DDE_Tnp_1 Location: 74 1-14 4 9 bp Feature: gene Location: 1543-1746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1651-1741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1651-174 1 bp Feature: gene Location: 1807-2163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1816-2137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1816-2137 bp Feature: gene Location: 2257-2910 bp Feature: domain Description: HTH_23 Location: 2350-2437 bp Feature: domain Description: HTH_23 Location: 2350-24 37 bp Feature: domain Description: InsE Location: 2566-2761 bp Feature: domain Description: InsE Location: 2566-2761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963)