myRT

myRT report for GCA_013822345.1_ASM1382234v1

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Seq: PNKH01000003.1 Isosphaera sp. isolate PR.3.33 PR_1000014_135596, whole genome shotgun sequence (135596 bp)
Overview 1 RT 1: 25356-31398 bp Neighborhood of RT #1 [25356, 31412] WcaJ_sugtrans RVT-Retrons PGM_like4 SO_family_Moco_dimer Feature: gene Location: 25356-26759 bp Feature: domain Description: WcaJ_sugtrans Location: 25401-26757 bp Feature: domain Description: WcaJ_sugtrans Location: 25401 -26757 bp Feature: gene Location: 26883-27059 bp Feature: gene Location: 27381-28709 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27834-28473 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27834-28473 bp Feature: gene Location: 28804-30156 bp Feature: domain Description: PGM_like4 Location: 28828-30133 bp Feature: domain Description: PGM_like4 Location: 28828-301 33 bp Feature: gene Location: 30288-31412 bp Feature: domain Description: SO_family_Moco_dimer Location: 30462-31398 bp Feature: domain Description: SO_family_Moco_dimer Location: 30462-31 398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WcaJ_sugtrans (TIGR03023), RVT-Retrons, PGM_like4 (cd05803), SO_family_Moco_dimer (cd02110)

Seq: PNKH01000071.1 Isosphaera sp. isolate PR.3.33 PR_1000299_42780, whole genome shotgun sequence (42780 bp)
Overview 1 RT 1: 18-6775 bp Neighborhood of RT #1 [18, 6775] RVT-Retrons Feature: gene Location: 18-1055 bp Feature: gene Location: 1140-2708 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1866-2481 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1866-2 481 bp Feature: gene Location: 3021-4715 bp Feature: gene Location: 4955-6775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: PNKH01000078.1 Isosphaera sp. isolate PR.3.33 PR_1000346_38614, whole genome shotgun sequence (38614 bp)
Overview 1 RT 1: 9206-20740 bp Neighborhood of RT #1 [9206, 20814] CitG PTPS RVT-Retrons WD40 WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 Feature: gene Location: 9206-9928 bp Feature: domain Description: CitG Location: 9212-9866 bp Feature: domain Description: CitG Location: 9212-9866 bp Feature: gene Location: 9930-10421 bp Feature: domain Description: PTPS Location: 9975-10410 bp Feature: domain Description: PTPS Location: 9975-10410 bp Feature: gene Location: 10470-11783 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10944-11565 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10944-11565 bp Feature: gene Location: 11934-13802 bp Feature: gene Location: 13945-20814 bp Feature: domain Description: WD40 Location: 14653-14923 bp Feature: domain Description: WD40 Location: 14653 -14923 bp Feature: domain Description: WD40 Location: 14980-15211 bp Feature: domain Description: WD40 Location: 14980-15211 bp Feature: domain Description: HEAT_2 Location: 15280-15511 bp Feature: domain Description: HEAT_2 Location: 15280-15511 bp Feature: domain Description: HEAT_2 Location: 15574-15787 bp Feature: domain Description: HEAT_2 Location: 15574-15787 bp Feature: domain Description: HEAT_2 Location: 16099-16306 bp Feature: domain Description: HEAT_2 Location: 16099-163 06 bp Feature: domain Description: HEAT_2 Location: 16354-16609 bp Feature: domain Description: HEAT_2 Location: 163 54-16609 bp Feature: domain Description: HEAT_2 Location: 16732-16891 bp Feature: domain Description: HEAT_2 Location: 1673 2-16891 bp Feature: domain Description: HEAT_2 Location: 16897-17056 bp Feature: domain Description: HEAT_2 Location: 16897-17056 bp Feature: domain Description: HEAT_2 Location: 17068-17275 bp Feature: domain Description: HEAT_2 Location: 17068-17275 bp Feature: domain Description: HEAT_2 Location: 18403-18640 bp Feature: domain Description: HEAT_2 Location: 18403 -18640 bp Feature: domain Description: HEAT_2 Location: 19057-19312 bp Feature: domain Description: HEAT_2 Location: 19057-193 12 bp Feature: domain Description: HEAT_2 Location: 19498-19615 bp Feature: domain Description: HEAT_2 Location: 19498-19615 bp Feature: domain Description: HEAT_2 Location: 20236-20437 bp Feature: domain Description: HEAT_2 Location: 2023 6-2043 7 bp Feature: domain Description: HEAT_2 Location: 20557-20740 bp Feature: domain Description: HEAT_2 Location: 20557-20740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, WD40 (smart00320), HEAT_2 (pfam13646), PTPS (pfam01242)

Seq: PNKH01000122.1 Isosphaera sp. isolate PR.3.33 PR_1000964_18989, whole genome shotgun sequence (18989 bp)
Overview 1 RT 1: 5420-11618 bp Neighborhood of RT #1 [5420, 11618] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 5420-5908 bp Feature: gene Location: 6062-6379 bp Feature: gene Location: 6857-9067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7490-8285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74 90-8285 bp Feature: domain Description: Intron_maturas2 Location: 8417-8627 bp Feature: domain Description: Intron_maturas2 Location: 84 17-8627 bp Feature: domain Description: HNHc Note: nucleases Location: 8828-8999 bp Feature: domain Description: HNHc Note: nucleases Location: 8828-8999 bp Feature: gene Location: 9412-10443 bp Feature: gene Location: 11292-11618 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)