myRT

myRT report for GCA_013822425.1_ASM1382242v1

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Seq: PNKL01000004.1 Gemmatimonas sp. isolate PR.004 PR_1000025_118161, whole genome shotgun sequence (118161 bp)
Overview 1 RT 1: 28771-36753 bp Neighborhood of RT #1 [28771, 36773] HflX AcylCoA_DH_N ACAD_fadE5 Acyl-CoA_dh_C RVT-GII GIIM rfaE_dom_I RhaT Feature: gene Location: 28771-30063 bp Feature: domain Description: HflX Location: 28813-30043 bp Feature: domain Description: HflX Location: 2881 3-30043 bp Feature: gene Location: 30243-32129 bp Feature: domain Description: AcylCoA_DH_N Location: 30363-30426 bp Feature: domain Description: AcylCoA_DH_N Location: 30363-30426 bp Feature: domain Description: ACAD_fadE5 Location: 30453-31704 bp Feature: domain Description: ACAD_fadE5 Location: 30453-31 704 bp Feature: domain Description: Acyl-CoA_dh_C Location: 31734-32109 bp Feature: domain Description: Acyl-CoA_dh_C Location: 31 734-321 09 bp Feature: gene Location: 33034-34422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33379-33991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33379-33991 bp Feature: domain Description: GIIM Note: maturase Location: 34048-34255 bp Feature: domain Description: GIIM Note: maturase Location: 34048-34255 bp Feature: gene Location: 34616-35560 bp Feature: domain Description: rfaE_dom_I Location: 34619-35540 bp Feature: domain Description: rfaE_dom_I Location: 3461 9-35540 bp Feature: gene Location: 35559-36773 bp Feature: domain Description: RhaT Location: 35829-36753 bp Feature: domain Description: RhaT Location: 35829-36753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HflX (COG2262), AcylCoA_DH_N (pfam12418), ACAD_fadE5 (cd01153), Acyl-CoA_dh_C (pfam12806), RVT-GII, GIIM (pfam08388), rfaE_dom_I (TIGR02198), RhaT (TIGR00776)

Seq: PNKL01000162.1 Gemmatimonas sp. isolate PR.004 PR_1010888_2477, whole genome shotgun sequence (2477 bp)
Overview 1 RT 1: 3-1852 bp Neighborhood of RT #1 [3, 1998] Resolvase Recombinase RVT-GII GIIM Feature: gene Location: 3-734 bp Feature: domain Description: Resolvase Location: 15-456 bp Feature: domain Description: Resolvase Location: 15-456 bp Feature: domain Description: Recombinase Location: 543-735 bp Feature: domain Description: Recombinase Location: 543-735 bp Feature: gene Location: 890-1219 bp Feature: gene Location: 1285-1998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1330-1564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1330-1564 bp Feature: domain Description: GIIM Note: maturase Location: 1627-1852 bp Feature: domain Description: GIIM Note: maturase Location: 162 7-1852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), Recombinase (pfam07508), RVT-GII, GIIM (pfam08388)