myRT

myRT report for GCA_013823135.1_ASM1382313v1

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Seq: PNLP01000016.1 Planctomycetaceae bacterium isolate DS2.012 DS2_1000072_130063, whole genome shotgun sequence (130063 bp)
Overview 1 RT 1: 66374-73360 bp 2 RT 2: 101183-112599 bp Neighborhood of RT #1 [66374, 73368] DprA_WH RVT-Retrons PQQ_2 RpoE Neighborhood of RT #2 [101183, 112661] WD40 WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 RVT-Retrons PTPS CitG Feature: gene Location: 66374-68137 bp Feature: gene Location: 68349-70112 bp Feature: domain Description: DprA_WH Location: 69579-69732 bp Feature: domain Description: DprA_WH Location: 69579-69732 bp Feature: gene Location: 70149-71723 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 70881-71496 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 70881 -71 496 bp Feature: gene Location: 71743-72675 bp Feature: domain Description: PQQ_2 Location: 71836-72607 bp Feature: domain Description: PQQ_2 Location: 71 836-72607 bp Feature: gene Location: 72754-73368 bp Feature: domain Description: RpoE Location: 72823-73360 bp Feature: domain Description: RpoE Location: 72823-73360 bp Feature: gene Location: 101183-107683 bp Feature: domain Description: WD40 Location: 101510-101777 bp Feature: domain Description: WD40 Location: 1 01 51 0-1 01 777 bp Feature: domain Description: WD40 Location: 101834-102065 bp Feature: domain Description: WD40 Location: 1 01 834-1 02065 bp Feature: domain Description: HEAT_2 Location: 102131-102371 bp Feature: domain Description: HEAT_2 Location: 1 021 31 -1 02371 bp Feature: domain Description: HEAT_2 Location: 102413-102560 bp Feature: domain Description: HEAT_2 Location: 1 0241 3-1 02560 bp Feature: domain Description: HEAT_2 Location: 102599-102743 bp Feature: domain Description: HEAT_2 Location: 1 02599-1 02743 bp Feature: domain Description: HEAT_2 Location: 102956-103163 bp Feature: domain Description: HEAT_2 Location: 1 02956-1 031 63 bp Feature: domain Description: HEAT_2 Location: 103421-103643 bp Feature: domain Description: HEAT_2 Location: 1 03421 -1 03643 bp Feature: domain Description: HEAT_2 Location: 103682-103892 bp Feature: domain Description: HEAT_2 Location: 1 03682-1 03892 bp Feature: domain Description: HEAT_2 Location: 103916-104129 bp Feature: domain Description: HEAT_2 Location: 1 0391 6-1 041 29 bp Feature: domain Description: HEAT_2 Location: 104807-104969 bp Feature: domain Description: HEAT_2 Location: 1 04807-1 04969 bp Feature: domain Description: HEAT_2 Location: 105257-105473 bp Feature: domain Description: HEAT_2 Location: 1 05257-1 05473 bp Feature: domain Description: HEAT_2 Location: 105905-106163 bp Feature: domain Description: HEAT_2 Location: 1 05905-1 061 63 bp Feature: domain Description: HEAT_2 Location: 106211-106454 bp Feature: domain Description: HEAT_2 Location: 1 0621 1 -1 06454 bp Feature: domain Description: HEAT_2 Location: 107111-107321 bp Feature: domain Description: HEAT_2 Location: 1 071 1 1 -1 07321 bp Feature: domain Description: HEAT_2 Location: 107441-107627 bp Feature: domain Description: HEAT_2 Location: 1 07441 -1 07627 bp Feature: gene Location: 107753-109657 bp Feature: gene Location: 109786-111111 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 110263-110884 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 0263-1 1 0884 bp Feature: gene Location: 111265-111756 bp Feature: domain Description: PTPS Location: 111310-111745 bp Feature: domain Description: PTPS Location: 1 1 1 31 0-1 1 1 745 bp Feature: gene Location: 111759-112661 bp Feature: domain Description: CitG Location: 111810-112599 bp Feature: domain Description: CitG Location: 1 1 1 81 0-1 1 2599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DprA_WH (pfam17782), RVT-Retrons, PQQ_2 (pfam13360), RpoE (COG3343), WD40 (smart00320), HEAT_2 (pfam13646), PTPS (pfam01242), CitG (pfam01874)

Seq: PNLP01000136.1 Planctomycetaceae bacterium isolate DS2.012 DS2_1002136_8770, whole genome shotgun sequence (8770 bp)
Overview 1 RT 1: 2-1742 bp Neighborhood of RT #1 [2, 1742] RVT-GII DDE_Tnp_IS66 Feature: gene Location: 2-784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293-758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 93-758 bp Feature: gene Location: 928-1488 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1279-1360 bp Feature: domain Description: DDE_Tnp_IS66 Location: 12 79-1360 bp Feature: gene Location: 1512-1742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_IS66 (pfam03050)

Seq: PNLP01000170.1 Planctomycetaceae bacterium isolate DS2.012 DS2_1005703_3501, whole genome shotgun sequence (3501 bp)
Overview 1 RT 1: 3-2493 bp Neighborhood of RT #1 [3, 2493] rve RVT-GII HTH_23 Feature: gene Location: 3-530 bp Feature: domain Description: rve Location: 135-492 bp Feature: domain Description: rve Location: 13 5-492 bp Feature: gene Location: 1017-1460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1221-1449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1221-1449 bp Feature: gene Location: 1468-2070 bp Feature: domain Description: HTH_23 Location: 1867-1945 bp Feature: domain Description: HTH_23 Location: 1867-1945 bp Feature: gene Location: 2155-2493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), RVT-GII, HTH_23 (pfam13384)

Seq: PNLP01000194.1 Planctomycetaceae bacterium isolate DS2.012 DS2_1009506_2169, whole genome shotgun sequence (2169 bp)
Overview 1 RT 1: 3-2142 bp Neighborhood of RT #1 [3, 2168] RVT-GII PHA02517 PHA02517 InsE RVT-GII Feature: gene Location: 3-464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237-447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237-4 4 7 bp Feature: gene Location: 475-873 bp Feature: domain Description: PHA02517 Location: 484-856 bp Feature: domain Description: PHA02517 Location: 4 84 -856 bp Feature: gene Location: 877-1248 bp Feature: domain Description: PHA02517 Location: 943-1246 bp Feature: domain Description: PHA02517 Location: 94 3-124 6 bp Feature: gene Location: 1253-1408 bp Feature: gene Location: 1519-1815 bp Feature: domain Description: InsE Location: 1531-1804 bp Feature: domain Description: InsE Location: 1531-1804 bp Feature: gene Location: 1788-2168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1884-2142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1884 -214 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)