myRT

myRT report for GCA_013867405.1_ASM1386740v1

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Seq: VDFE01001120.1 Cylindrospermopsis raciborskii CS-506_C scaffold114, whole genome shotgun sequence (11362 bp)
Overview 1 RT 1: 3404-8570 bp Neighborhood of RT #1 [3404, 8584] RNR_II_monomer RVT-GII GIIM RTPR DUF3598 Feature: gene Location: 3404-3667 bp Feature: domain Description: RNR_II_monomer Location: 3467-3662 bp Feature: domain Description: RNR_II_monomer Location: 3467-3662 bp Feature: gene Location: 4097-4249 bp Feature: gene Location: 4276-5589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4453-5050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4453-5050 bp Feature: domain Description: GIIM Note: maturase Location: 5137-5371 bp Feature: domain Description: GIIM Note: maturase Location: 51 37-5371 bp Feature: gene Location: 5718-7700 bp Feature: domain Description: RTPR Location: 5721-7674 bp Feature: domain Description: RTPR Location: 5721 -7674 bp Feature: gene Location: 7730-8584 bp Feature: domain Description: DUF3598 Location: 7739-8570 bp Feature: domain Description: DUF3598 Location: 7739-8570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNR_II_monomer (cd01676), RVT-GII, GIIM (pfam08388), RTPR (TIGR02505), DUF3598 (pfam12204)

Seq: VDFE01000984.1 Cylindrospermopsis raciborskii CS-506_C scaffold127, whole genome shotgun sequence (20601 bp)
Overview 1 RT 1: 11297-16452 bp Neighborhood of RT #1 [11297, 16553] DppC KOG0404 TRX_NTR RVT_N RVT-GII GIIM KOG0404 PulG Feature: gene Location: 11297-12187 bp Feature: domain Description: DppC Location: 11345-12143 bp Feature: domain Description: DppC Location: 11345-12 143 bp Feature: gene Location: 12324-13478 bp Feature: domain Description: KOG0404 Location: 12327-13059 bp Feature: domain Description: KOG0404 Location: 12 32 7-13059 bp Feature: domain Description: TRX_NTR Location: 13179-13464 bp Feature: domain Description: TRX_NTR Location: 13179-13464 bp Feature: gene Location: 13614-15128 bp Feature: RT Description: RVT_N Location: 13698-13884 bp Feature: RT Description: RVT_N Location: 13698-13884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13956-14577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13956-14577 bp Feature: domain Description: GIIM Note: maturase Location: 14700-14922 bp Feature: domain Description: GIIM Note: maturase Location: 14700-1492 2 bp Feature: gene Location: 15782-15970 bp Feature: domain Description: KOG0404 Location: 15812-15959 bp Feature: domain Description: KOG0404 Location: 15812 -15959 bp Feature: gene Location: 16185-16553 bp Feature: domain Description: PulG Location: 16239-16452 bp Feature: domain Description: PulG Location: 162 39-16452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DppC (COG1173), KOG0404 (KOG0404, Thioredoxin reductase ), TRX_NTR (cd02949), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PulG (pfam11773)

Seq: VDFE01000335.1 Cylindrospermopsis raciborskii CS-506_C scaffold179, whole genome shotgun sequence (46009 bp)
Overview 1 RT 1: 978-5277 bp Neighborhood of RT #1 [978, 5339] RVT_N RVT-GII GIIM QueC MviM Feature: gene Location: 978-1115 bp Feature: gene Location: 1192-1392 bp Feature: gene Location: 1562-3262 bp Feature: RT Description: RVT_N Location: 1589-1799 bp Feature: RT Description: RVT_N Location: 1589-1799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1853-2534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1853 -253 4 bp Feature: domain Description: GIIM Note: maturase Location: 2633-2867 bp Feature: domain Description: GIIM Note: maturase Location: 263 3 -2867 bp Feature: gene Location: 3395-4063 bp Feature: domain Description: QueC Location: 3398-4055 bp Feature: domain Description: QueC Location: 3 3 98-4055 bp Feature: gene Location: 4260-5339 bp Feature: domain Description: MviM Location: 4326-5277 bp Feature: domain Description: MviM Location: 43 26-5277 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), QueC (pfam06508), MviM (COG0673)

Seq: VDFE01000800.1 Cylindrospermopsis raciborskii CS-506_C scaffold40, whole genome shotgun sequence (13343 bp)
Overview 1 RT 1: 4640-8240 bp Neighborhood of RT #1 [4640, 8257] cyt_b559_alpha CpeS RVT_N RVT-GII RVT-GII GIIM CpeS HEAT Feature: gene Location: 4640-4888 bp Feature: domain Description: cyt_b559_alpha Location: 4646-4877 bp Feature: domain Description: cyt_b559_alpha Location: 4 64 6-4 877 bp Feature: gene Location: 5077-5358 bp Feature: domain Description: CpeS Location: 5080-5287 bp Feature: domain Description: CpeS Location: 5080-5287 bp Feature: gene Location: 5530-6630 bp Feature: RT Description: RVT_N Location: 5566-5737 bp Feature: RT Description: RVT_N Location: 5566-5737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5758-6112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5758-6112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6112-6277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6112-6277 bp Feature: domain Description: GIIM Note: maturase Location: 6337-6529 bp Feature: domain Description: GIIM Note: maturase Location: 6337-6529 bp Feature: gene Location: 7181-7447 bp Feature: domain Description: CpeS Location: 7187-7415 bp Feature: domain Description: CpeS Location: 7187-74 15 bp Feature: gene Location: 7586-8257 bp Feature: domain Description: HEAT Location: 7595-8240 bp Feature: domain Description: HEAT Location: 7595-824 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cyt_b559_alpha (TIGR01332), CpeS (pfam09367), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HEAT (sd00044)