myRT

myRT report for GCA_013867725.1_ASM1386772v1

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Seq: JACEIQ010000012.1 Paenactinomyces guangxiensis strain s-10 Scaffolds_12_126294, whole genome shotgun sequence (126294 bp)
Overview 1 RT 1: 122356-126292 bp Neighborhood of RT #1 [122356, 126292] A_NRPS_ApnA-like MFS_MefA_like RVT-GII GIIM Feature: gene Location: 122356-122766 bp Feature: domain Description: A_NRPS_ApnA-like Location: 122404-122749 bp Feature: domain Description: A_NRPS_ApnA-like Location: 1 22404-1 22749 bp Feature: gene Location: 122895-124184 bp Feature: domain Description: MFS_MefA_like Location: 123009-124152 bp Feature: domain Description: MFS_MefA_like Location: 1 23009-1 241 52 bp Feature: gene Location: 124405-125652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124609-125266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 24609-1 25266 bp Feature: domain Description: GIIM Note: maturase Location: 125347-125575 bp Feature: domain Description: GIIM Note: maturase Location: 1 25347-1 25575 bp Feature: gene Location: 125669-126022 bp Feature: gene Location: 126092-126292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT A_NRPS_ApnA-like (cd17644), MFS_MefA_like (cd06173), RVT-GII, GIIM (pfam08388)

Seq: JACEIQ010000015.1 Paenactinomyces guangxiensis strain s-10 Scaffolds_15_117786, whole genome shotgun sequence (117786 bp)
Overview 1 RT 1: 56281-60104 bp Neighborhood of RT #1 [56281, 60104] UbiE RVT_N RVT-GII GIIM HNHc Feature: gene Location: 56281-56913 bp Feature: domain Description: UbiE Location: 56326-56734 bp Feature: domain Description: UbiE Location: 5632 6-56734 bp Feature: gene Location: 57083-57454 bp Feature: RT Description: RVT_N Location: 57221-57443 bp Feature: RT Description: RVT_N Location: 572 2 1-57443 bp Feature: gene Location: 57421-58839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57508-58138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57508-58138 bp Feature: domain Description: GIIM Note: maturase Location: 58189-58423 bp Feature: domain Description: GIIM Note: maturase Location: 58189-5842 3 bp Feature: domain Description: HNHc Note: nucleases Location: 58633-58792 bp Feature: domain Description: HNHc Note: nucleases Location: 58633-58792 bp Feature: gene Location: 59348-59575 bp Feature: gene Location: 59592-60104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UbiE (COG2226), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JACEIQ010000023.1 Paenactinomyces guangxiensis strain s-10 Scaffolds_23_53730, whole genome shotgun sequence (53730 bp)
Overview 1 RT 1: 47066-53393 bp Neighborhood of RT #1 [47066, 53393] MarR_2 RVT-Retrons Feature: gene Location: 47066-49741 bp Feature: gene Location: 49766-51385 bp Feature: domain Description: MarR_2 Location: 50936-51056 bp Feature: domain Description: MarR_2 Location: 5093 6-51056 bp Feature: gene Location: 51416-52876 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51989-52607 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51989-52607 bp Feature: gene Location: 52954-53097 bp Feature: gene Location: 53199-53393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MarR_2 (pfam12802), RVT-Retrons

Seq: JACEIQ010000038.1 Paenactinomyces guangxiensis strain s-10 Scaffolds_38_12719, whole genome shotgun sequence (12719 bp)
Overview 1 RT 1: 7697-12510 bp Neighborhood of RT #1 [7697, 12521] HisM PBP2_Cystine_like_1 RVT-GII RVT-GII RVT-GII Feature: gene Location: 7697-8374 bp Feature: domain Description: HisM Location: 7718-8342 bp Feature: domain Description: HisM Location: 7718-834 2 bp Feature: gene Location: 8410-9222 bp Feature: domain Description: PBP2_Cystine_like_1 Location: 8527-9181 bp Feature: domain Description: PBP2_Cystine_like_1 Location: 8527-9181 bp Feature: gene Location: 9815-10228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9818-10181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9818-10181 bp Feature: gene Location: 10363-11652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10618-11305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10618-11305 bp Feature: gene Location: 12135-12521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12279-12510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12279-12510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HisM (COG0765), PBP2_Cystine_like_1 (cd13713)

Seq: JACEIQ010000003.1 Paenactinomyces guangxiensis strain s-10 Scaffolds_3_219473, whole genome shotgun sequence (219473 bp)
Overview 1 RT 1: 80990-87422 bp Neighborhood of RT #1 [80990, 88000] MltB RVT-GII Intron_maturas2 MltB NlpD DUF87 Feature: gene Location: 80990-81574 bp Feature: gene Location: 81666-81965 bp Feature: domain Description: MltB Location: 81813-81930 bp Feature: domain Description: MltB Location: 81813-81930 bp Feature: gene Location: 82551-84284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82815-83649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82815 -83649 bp Feature: domain Description: Intron_maturas2 Location: 83727-84021 bp Feature: domain Description: Intron_maturas2 Location: 83727-84021 bp Feature: gene Location: 84488-85231 bp Feature: domain Description: MltB Location: 84590-84740 bp Feature: domain Description: MltB Location: 845 90-84740 bp Feature: domain Description: NlpD Location: 84776-85220 bp Feature: domain Description: NlpD Location: 84776-85 220 bp Feature: gene Location: 85394-88000 bp Feature: domain Description: DUF87 Location: 86636-87422 bp Feature: domain Description: DUF87 Location: 86636-87422 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MltB (TIGR02282), RVT-GII, Intron_maturas2 (pfam01348), NlpD (COG0739), DUF87 (pfam01935)

Seq: JACEIQ010000005.1 Paenactinomyces guangxiensis strain s-10 Scaffolds_5_199289, whole genome shotgun sequence (199289 bp)
Overview 1 RT 1: 119002-124191 bp Neighborhood of RT #1 [119002, 124193] Spo0J BcsQ RVT-GII Intron_maturas2 nucleoid_noc Feature: gene Location: 119002-119865 bp Feature: domain Description: Spo0J Location: 119089-119827 bp Feature: domain Description: Spo0J Location: 119089-119827 bp Feature: gene Location: 119858-120934 bp Feature: domain Description: BcsQ Location: 120218-120920 bp Feature: domain Description: BcsQ Location: 120218-120920 bp Feature: gene Location: 121004-122515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121304-121955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121304-121955 bp Feature: domain Description: Intron_maturas2 Location: 122081-122423 bp Feature: domain Description: Intron_maturas2 Location: 122081-122423 bp Feature: gene Location: 122542-122724 bp Feature: gene Location: 123381-124193 bp Feature: domain Description: nucleoid_noc Location: 123435-124191 bp Feature: domain Description: nucleoid_noc Location: 123435-124191 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spo0J (COG1475), BcsQ (COG1192), RVT-GII, Intron_maturas2 (pfam01348), nucleoid_noc (TIGR04285)

Seq: JACEIQ010000007.1 Paenactinomyces guangxiensis strain s-10 Scaffolds_7_177565, whole genome shotgun sequence (177565 bp)
Overview 1 RT 1: 160957-163669 bp Neighborhood of RT #1 [160957, 163669] Glyco_hydro_11 RVT-GII FGE-sulfatase Feature: gene Location: 160957-161589 bp Feature: domain Description: Glyco_hydro_11 Location: 161044-161581 bp Feature: domain Description: Glyco_hydro_11 Location: 161044-161581 bp Feature: gene Location: 162229-162420 bp Feature: gene Location: 162425-162616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162449-162593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162449-162593 bp Feature: gene Location: 162648-163487 bp Feature: domain Description: FGE-sulfatase Location: 162729-163479 bp Feature: domain Description: FGE-sulfatase Location: 1627 29-16347 9 bp Feature: gene Location: 163541-163669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_11 (pfam00457), RVT-GII, FGE-sulfatase (pfam03781)