myRT

myRT report for GCA_013911065.1_ASM1391106v1

Download annotations/find similar RTs

Seq: JACERV010000013.1 Ruminococcus sp. isolate MAG_3 NODE_28_length_128417_cov_80.888643, whole genome shotgun sequence (128417 bp)
Overview 1 RT 1: 9596-14865 bp 2 RT 2: 53916-60109 bp Neighborhood of RT #1 [9596, 14876] HTH_XRE RVT-GII GIIM RVT-GII GIIM RVT-GII OYE_like_FMN_family Neighborhood of RT #2 [53916, 60192] ExeA RVT-GII GIIM RVT-GII GIIM RVT-GII LPD18 DUF4316 Feature: gene Location: 9596-9850 bp Feature: domain Description: HTH_XRE Location: 9611-9791 bp Feature: domain Description: HTH_XRE Location: 961 1 -9791 bp Feature: gene Location: 9956-10087 bp Feature: gene Location: 10163-10777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10178-10319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 78-1 031 9 bp Feature: domain Description: GIIM Note: maturase Location: 10379-10610 bp Feature: domain Description: GIIM Note: maturase Location: 1 0379-1 061 0 bp Feature: gene Location: 10842-12086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11046-11703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 046-1 1 703 bp Feature: domain Description: GIIM Note: maturase Location: 11784-12000 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 784-1 2000 bp Feature: gene Location: 12601-13314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12811-13288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 281 1 -1 3288 bp Feature: gene Location: 13651-13827 bp Feature: gene Location: 13875-14876 bp Feature: domain Description: OYE_like_FMN_family Location: 13902-14865 bp Feature: domain Description: OYE_like_FMN_family Location: 1 3902-1 4865 bp Feature: gene Location: 53916-54719 bp Feature: domain Description: ExeA Location: 53934-54684 bp Feature: domain Description: ExeA Location: 53934-54684 bp Feature: gene Location: 54731-55054 bp Feature: gene Location: 55083-55745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55098-55239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55098-55239 bp Feature: domain Description: GIIM Note: maturase Location: 55299-55512 bp Feature: domain Description: GIIM Note: maturase Location: 55299-5551 2 bp Feature: gene Location: 55810-57054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56014-56671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5601 4-56671 bp Feature: domain Description: GIIM Note: maturase Location: 56752-56968 bp Feature: domain Description: GIIM Note: maturase Location: 56752-56968 bp Feature: gene Location: 57569-58327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57824-58301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57824-58301 bp Feature: gene Location: 58865-59170 bp Feature: gene Location: 59338-60192 bp Feature: domain Description: LPD18 Location: 59641-59887 bp Feature: domain Description: LPD1 8 Location: 59641 -59887 bp Feature: domain Description: DUF4316 Location: 59950-60109 bp Feature: domain Description: DUF431 6 Location: 59950-601 09 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-GII, GIIM (pfam08388), OYE_like_FMN_family (cd02803), ExeA (COG3267), LPD18 (pfam18832), DUF4316 (pfam14195)

Seq: JACERV010000019.1 Ruminococcus sp. isolate MAG_3 NODE_41_length_100802_cov_68.873782, whole genome shotgun sequence (100802 bp)
Overview 1 RT 1: 76718-83450 bp Neighborhood of RT #1 [76718, 83881] Peptidase_A24 RVT-GII Intron_maturas2 HNHc SLH SLH SLH PKD PKD PKD Feature: gene Location: 76718-77170 bp Feature: domain Description: Peptidase_A24 Location: 76751-77030 bp Feature: domain Description: Peptidase_A2 4 Location: 76751-77030 bp Feature: gene Location: 77160-77390 bp Feature: gene Location: 77558-79372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77840-78632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77840-78632 bp Feature: domain Description: Intron_maturas2 Location: 78797-79022 bp Feature: domain Description: Intron_maturas2 Location: 78797-7902 2 bp Feature: domain Description: HNHc Note: nucleases Location: 79175-79349 bp Feature: domain Description: HNHc Note: nucleases Location: 79175-79349 bp Feature: gene Location: 79543-79767 bp Feature: gene Location: 79904-83881 bp Feature: domain Description: SLH Location: 80003-80126 bp Feature: domain Description: SLH Location: 80003-8012 6 bp Feature: domain Description: SLH Location: 80186-80315 bp Feature: domain Description: SLH Location: 80186-80315 bp Feature: domain Description: SLH Location: 80381-80507 bp Feature: domain Description: SLH Location: 80381-80507 bp Feature: domain Description: PKD Location: 81395-81500 bp Feature: domain Description: PKD Location: 81395-81500 bp Feature: domain Description: PKD Location: 83222-83279 bp Feature: domain Description: PKD Location: 832 2 2 -832 79 bp Feature: domain Description: PKD Location: 83348-83450 bp Feature: domain Description: PKD Location: 83348-83450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_A24 (pfam01478), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SLH (pfam00395), PKD (smart00089)