myRT

myRT report for GCA_013912425.1_ASM1391242v1

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Seq: JACEOS010000005.1 Pseudomonas aeruginosa strain PAL1.63 NODE_5_length_294466_cov_21.3081, whole genome shotgun sequence (294466 bp)
Overview 1 RT 1: 195445-205753 bp 2 RT 2: 222011-230851 bp Neighborhood of RT #1 [195445, 205755] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [222011, 230880] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 195445-196566 bp Feature: domain Description: COG3177 Location: 195463-196555 bp Feature: domain Description: COG31 77 Location: 1 95463-1 96555 bp Feature: gene Location: 196828-196989 bp Feature: gene Location: 197292-198977 bp Feature: RT Description: RVT_N Location: 197349-197589 bp Feature: RT Description: RVT_N Location: 1 97349-1 97589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197637-198273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 97637-1 98273 bp Feature: domain Description: GIIM Note: maturase Location: 198327-198558 bp Feature: domain Description: GIIM Note: maturase Location: 1 98327-1 98558 bp Feature: domain Description: HNH Note: nucleases Location: 198810-198948 bp Feature: domain Description: HNH Note: nucleases Location: 1 9881 0-1 98948 bp Feature: gene Location: 200058-203795 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 200166-200823 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 2001 66-200823 bp Feature: domain Description: PRK09776 Location: 201036-201507 bp Feature: domain Description: PRK09776 Location: 201 036-201 507 bp Feature: domain Description: PAS Location: 201558-202089 bp Feature: domain Description: PAS Location: 201 558-202089 bp Feature: domain Description: PRK10060 Location: 202098-203745 bp Feature: domain Description: PRK1 0060 Location: 202098-203745 bp Feature: gene Location: 203902-205755 bp Feature: domain Description: PRK05658 Location: 203914-205753 bp Feature: domain Description: PRK05658 Location: 20391 4-205753 bp Feature: gene Location: 222011-223225 bp Feature: domain Description: PRK10770 Location: 222023-223217 bp Feature: domain Description: PRK1 0770 Location: 222023-22321 7 bp Feature: gene Location: 223284-226076 bp Feature: domain Description: LptD Location: 223479-226062 bp Feature: domain Description: LptD Location: 223479-226062 bp Feature: gene Location: 226209-227921 bp Feature: RT Description: RVT_N Location: 226266-226509 bp Feature: RT Description: RVT_N Location: 226266-226509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226554-227187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226554-2271 87 bp Feature: domain Description: YkfC Location: 227400-227550 bp Feature: domain Description: YkfC Location: 227400-227550 bp Feature: domain Description: HNH Note: nucleases Location: 227727-227865 bp Feature: domain Description: HNH Note: nucleases Location: 227727-227865 bp Feature: gene Location: 229193-230209 bp Feature: domain Description: COG3178 Location: 229196-230195 bp Feature: domain Description: COG31 78 Location: 2291 96-2301 95 bp Feature: gene Location: 230206-230880 bp Feature: domain Description: NTP_transferase_like_1 Location: 230212-230851 bp Feature: domain Description: NTP_transferase_like_1 Location: 23021 2-230851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)